Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77122 271 / 4e-90 Uncharacterised protein family UPF0090 (.1) AT1G69210 159 / 2e-46 Uncharacterised protein family UPF0090 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G157300 [exp] 147 / 5e-42 AT1G69210 239 / 8e-78 Uncharacterised protein family UPF0090 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028624 [exp] 287 / 1e-95 AT1G77122 283 / 1e-93 Uncharacterised protein family UPF0090 (.1) Lus10018923 [exp] 284 / 3e-94 AT1G77122 283 / 1e-93 Uncharacterised protein family UPF0090 (.1) Lus10026674 [exp] 151 / 2e-44 AT1G69210 249 / 5e-83 Uncharacterised protein family UPF0090 (.1.2) Lus10014566 [exp] 87 / 1e-20 AT1G69210 120 / 7e-34 Uncharacterised protein family UPF0090 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02576 [poplar] [flax] DUF150 RimP N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G071700.1 pacid=42776748 polypeptide=Potri.002G071700.1.p locus=Potri.002G071700 ID=Potri.002G071700.1.v4.1 annot-version=v4.1 ATGAATTTGATTTCCCCATGGAATTTAAGATTCCCTCCGATTTCAATTCCACCAATCACCGCCTCCCCCCACTGCAAACCTTCACTCACAAACCATTCCT TCTCCTTCCCATTTTGGCCACACCCATGTCGCATAATTTCAACTACGTCCTTTCTAGTCCATGCCAAGAAGAGAAACTCCAAGCCCGAGCCAGTCCTTAA ACCAACCATAATCGAACAAGTATCAGGAGACGATGAAGATAAAGAAGAACAGCTTCTCTTTGATGATTTTGAAGATGAAGCAGTGATGGATGGTGATGAT GATTATTTCGATGATGAAGAGTTTTTGGAAGATGAAGCAGAACTATACGTTGGTGATGGAGGTGGTGGAGGTGGGATTGCACTTGCTGGGACATGGTGGG ATAAAGAAGCATTGAAGATAGCTGAAGAGGTTTGCTCAACTTTTGACCGGGAATTGGAAATTTATGCCTTCAAGACTTTGTCGAATTCCACCATTCAAGT CCGCATTGAAAGGCTTACAAATAAGTCTGGTTCCCCCAATATGGAAGATATTGAAGCCTTTTCTACAACCTATAGAGCGCGGTTGGATGAAGCTGAACTT GCTAAAACTATAACTGAGAATATTACTTTGGAGGTATCTTCTCCTGGTGTTGAAAGAGTTGTTCGGATTCCAGAAGATCTGGACCGGTTCAAGGATCGAG CTATGTATGTGAAATATGTTAATGAGGCTGATGCTAAAGATTCGTCCTCAGAAAGTGATGGTGTTCTTAGGCTCGTTTCTTTTGATATGGAGACCAAATA CTGCACCTGGGGATTAGCAGATGTGAGGGTAAACAGAGAAAAAGCAGGGAAGGGAAGACCTCTCAGCAAAAAGCAAAGAGAGTGGCGCTTGGACACCCCT TTCCATTCCTTGCGTCTAGTTCGAGTGTATCCTGAAATTTGA
AA sequence Show only first row Show all	>Potri.002G071700.1 pacid=42776748 polypeptide=Potri.002G071700.1.p locus=Potri.002G071700 ID=Potri.002G071700.1.v4.1 annot-version=v4.1 MNLISPWNLRFPPISIPPITASPHCKPSLTNHSFSFPFWPHPCRIISTTSFLVHAKKRNSKPEPVLKPTIIEQVSGDDEDKEEQLLFDDFEDEAVMDGDD DYFDDEEFLEDEAELYVGDGGGGGGIALAGTWWDKEALKIAEEVCSTFDRELEIYAFKTLSNSTIQVRIERLTNKSGSPNMEDIEAFSTTYRARLDEAEL AKTITENITLEVSSPGVERVVRIPEDLDRFKDRAMYVKYVNEADAKDSSSESDGVLRLVSFDMETKYCTWGLADVRVNREKAGKGRPLSKKQREWRLDTP FHSLRLVRVYPEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77122			Uncharacterised protein family...		Potri.002G071700 [exp]	0	1
AT3G10350			P-loop containing nucleoside t...		Potri.008G037100 [exp]	1.73	0.9280
AT2G42975			unknown protein		Potri.005G204200 [exp]	2.82	0.9036
AT1G76050			Pseudouridine synthase family ...		Potri.002G016800 [exp]	6.48	0.8941
AT4G20030			RNA-binding (RRM/RBD/RNP motif...		Potri.003G074900 [exp]	13.63	0.9061
AT5G27280			Zim17-type zinc finger protein...		Potri.002G015900 [exp]	14.96	0.8639
AT1G34420			leucine-rich repeat transmembr...		Potri.019G084700 [exp]	15.16	0.8701
AT4G35750			SEC14 cytosolic factor family ...		Potri.002G014700 [exp]	15.39	0.8477
AT2G48120		PAC	pale cress protein (PAC) (.1),...		Potri.014G138500 [exp]	25.92	0.9059
AT5G59910		HTB4	Histone superfamily protein (....		Potri.008G030400 [exp]	30.39	0.8335
AT4G10270			Wound-responsive family protei...		Potri.019G116700 [exp]	32.24	0.8784

Compare expression of checked genes

Potri.002G071700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.