Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42240 742 / 0 SCPL42 serine carboxypeptidase-like 42 (.1) AT1G43780 697 / 0 SCPL44 serine carboxypeptidase-like 44 (.1) AT5G42230 676 / 0 SCPL41 serine carboxypeptidase-like 41 (.1) AT2G12480 621 / 0 SCPL43 serine carboxypeptidase-like 43 (.1.2) AT2G33530 410 / 9e-140 SCPL46 serine carboxypeptidase-like 46 (.1) AT1G28110 394 / 1e-133 SCPL45 serine carboxypeptidase-like 45 (.1.2) AT3G63470 343 / 2e-113 SCPL40 serine carboxypeptidase-like 40 (.1) AT3G02110 335 / 1e-110 SCPL25 serine carboxypeptidase-like 25 (.1) AT4G30810 331 / 7e-109 SCPL29 serine carboxypeptidase-like 29 (.1) AT4G30610 329 / 3e-108 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G187700 [exp] 645 / 0 AT5G42240 554 / 0.0 serine carboxypeptidase-like 42 (.1) Potri.001G065900 [exp] 399 / 8e-136 AT1G28110 766 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.012G105500 [exp] 395 / 5e-134 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036500 [exp] 390 / 4e-132 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.003G164000 [exp] 384 / 1e-129 AT1G28110 758 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.015G104700 [exp] 375 / 2e-126 AT1G28110 715 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034400 [exp] 365 / 5e-122 AT1G28110 566 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034600 [exp] 361 / 2e-120 AT1G28110 563 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036000 [exp] 357 / 5e-119 AT1G28110 548 / 0.0 serine carboxypeptidase-like 45 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028625 [exp] 709 / 0 AT5G42240 713 / 0.0 serine carboxypeptidase-like 42 (.1) Lus10018924 [exp] 701 / 0 AT5G42240 714 / 0.0 serine carboxypeptidase-like 42 (.1) Lus10016722 [exp] 385 / 5e-130 AT1G28110 688 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10036016 [exp] 384 / 3e-129 AT1G28110 690 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10042287 [exp] 376 / 1e-126 AT1G28110 598 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10040324 [exp] 350 / 5e-116 AT2G33530 532 / 0.0 serine carboxypeptidase-like 46 (.1) Lus10013395 [exp] 343 / 3e-113 AT1G28110 534 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10023505 [exp] 341 / 5e-113 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10010331 [exp] 340 / 4e-112 AT1G28110 540 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10023446 [exp] 339 / 1e-111 AT1G28110 520 / 0.0 serine carboxypeptidase-like 45 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.002G071800.1 pacid=42778213 polypeptide=Potri.002G071800.1.p locus=Potri.002G071800 ID=Potri.002G071800.1.v4.1 annot-version=v4.1 ATGGTCATGGGGTTTCATGAGACGGGTGGTTGTGGGTTTGGTGGGGTGTTAATTGCTGTGTTGGGTTTCGGGTTGTTGTTGAGTAATGTGGTGGATGGAT ATCCATCTAAGGATCTGGTCCTCAACTTGCCTGGTCAACCAAAGGTTGGCTTCAGGCAATATGCTGGTTATGTTGATGTGGATGTCAAGAATGGAAGGAG CTTGTTTTACTACTTCGTTGAGGCTGACAAGGACCCTGACCAGAAGCCCCTAGCTCTCTGGCTCAACGGAGGCCCTGGTTGTTCCTCTATTGGTGGAGGA GCCTTCACAGAGTTGGGTCCATTCTTTCCTAAAGGAGATGGCCGCGGCCTTCGAAGAAATTCAATGTCCTGGAACAGAGCATCGAATCTCCTCTTTGTCG AGTCTCCTGCTGGAGTAGGATGGTCGTACTCAAATACAACTTCTGATTATACTACTGGAGATGCCAAAACAGCCAAGGATATGCACATGTTCTTATTGAA GTGGTATGAGAAGTTCCCAGATTTCAAATCCAGAGAATTGTTTCTCACTGGAGAAAGTTATGCAGGGCATTACATACCACAGCTGGCTGAGGTTCTTCTG GACCATAATGCACAGTCAACTAATTTCAAGTTCAATATCAAAGGAGTTGCTATTGGTAATCCACTTCTTAGACTTGATCGGGATGTTCCAGCAACATACG AATTCTTTTGGTCCCATGGGATGATTTCTGATGAGATCGGCCTCAAGATCATGAATGAATGCGCCTTTAATGACTACACCTATGCAAGTCCGCATAATGT AACCGATTCTTGCAATGATGCGATATCTCAAGCAAATAGCATCATTGGCGATTACATAAACAATTATGATGTGATTCTCGATGTTTGCTATCCATCCATA GTAAATCAAGAGCTACGATTGAGGAAAATGGCTACCAAGATAAGTGTTGGTGTTGATGTGTGTATGACCTATGAAAGACGTTTCTATTTCAATCTTCCCG AGGTTCAGAAGGCTCTTCATGCAAATCGGACCAAACTACCTTATCCTTGGTCCATGTGCAGTGATGTATTAAACTACAGCGACACTGATGGTAACATTGA CATACTTCCCATTCTAAAAAAGATAATTCAAAATCATATTCCAGTTTGGGTTTTCAGTGGCGATCAAGATTCTGTTGTGCCACTTCTGGGCTCCCGGACA CTCGTCAAAGAACTTGCCCAAGATCTAAATTTCAAGATTACAGTCCCATATGGAACATGGTTTCACAAAGGCCAGGTTGGAGGTTGGGCAACAGAATATG GAAATTTATTGACTTTTGCCACAGTGAGGTCAGCTGCCCATATGGTGCCCTATGCACAACCATCAAGAGCTTTGCATCTGTTCAGTTCATTTGTGCACGG CCGGAGATTGCCAAATACAACACACGTTCGAATGGATGATTGA
AA sequence Show only first row Show all	>Potri.002G071800.1 pacid=42778213 polypeptide=Potri.002G071800.1.p locus=Potri.002G071800 ID=Potri.002G071800.1.v4.1 annot-version=v4.1 MVMGFHETGGCGFGGVLIAVLGFGLLLSNVVDGYPSKDLVLNLPGQPKVGFRQYAGYVDVDVKNGRSLFYYFVEADKDPDQKPLALWLNGGPGCSSIGGG AFTELGPFFPKGDGRGLRRNSMSWNRASNLLFVESPAGVGWSYSNTTSDYTTGDAKTAKDMHMFLLKWYEKFPDFKSRELFLTGESYAGHYIPQLAEVLL DHNAQSTNFKFNIKGVAIGNPLLRLDRDVPATYEFFWSHGMISDEIGLKIMNECAFNDYTYASPHNVTDSCNDAISQANSIIGDYINNYDVILDVCYPSI VNQELRLRKMATKISVGVDVCMTYERRFYFNLPEVQKALHANRTKLPYPWSMCSDVLNYSDTDGNIDILPILKKIIQNHIPVWVFSGDQDSVVPLLGSRT LVKELAQDLNFKITVPYGTWFHKGQVGGWATEYGNLLTFATVRSAAHMVPYAQPSRALHLFSSFVHGRRLPNTTHVRMDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Potri.002G071800 [exp]	0	1
AT2G16365			F-box family protein (.1.2.3.4...		Potri.004G157000 [exp]	2.23	0.8242
AT4G32295			unknown protein		Potri.018G027100 [exp]	5.09	0.7503
AT5G59960			unknown protein		Potri.001G237000 [exp]	7.34	0.8072
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Potri.012G089700 [exp]	9.16	0.7126
AT1G51550			Kelch repeat-containing F-box ...		Potri.008G006300 [exp]	14.28	0.8022
AT4G22290			Ubiquitin-specific protease fa...		Potri.002G176200 [exp]	16.27	0.7921
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Potri.009G031900 [exp]	18.76	0.7479
AT5G25930			Protein kinase family protein ...		Potri.018G088074 [exp]	19.44	0.7446
					Potri.006G143901 [exp]	20.14	0.7774
AT1G28270		RALFL4	ralf-like 4 (.1)		Potri.004G044900 [exp]	22.58	0.7471

Compare expression of checked genes

Potri.002G071800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.