Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48880 478 / 7e-168 TBL7 TRICHOME BIREFRINGENCE-LIKE 7 (.1) AT3G06080 296 / 3e-96 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G19160 290 / 5e-94 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT3G62390 286 / 2e-92 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT3G11570 284 / 7e-92 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1) AT5G06230 280 / 5e-91 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT5G20590 270 / 1e-85 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT5G49340 258 / 1e-81 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1) AT3G12060 253 / 1e-78 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT1G60790 249 / 5e-77 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G060800 [exp] 486 / 1e-171 AT1G48880 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 7 (.1) Potri.002G054400 [exp] 300 / 5e-98 AT3G06080 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.002G195800 [exp] 301 / 5e-97 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.016G074800 [exp] 295 / 3e-96 AT3G11570 506 / 2e-179 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Potri.008G203900 [exp] 286 / 1e-92 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Potri.006G071500 [exp] 278 / 1e-88 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.018G133000 [exp] 273 / 6e-87 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.001G010900 [exp] 268 / 2e-84 AT5G06700 472 / 5e-161 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.006G193900 [exp] 265 / 4e-82 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042789 [exp] 573 / 0 AT1G48880 447 / 7e-156 TRICHOME BIREFRINGENCE-LIKE 7 (.1) Lus10029761 [exp] 567 / 0 AT1G48880 447 / 8e-156 TRICHOME BIREFRINGENCE-LIKE 7 (.1) Lus10003734 [exp] 294 / 2e-95 AT3G06080 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10034041 [exp] 289 / 2e-93 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10028025 [exp] 288 / 1e-92 AT3G06080 520 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10041219 [exp] 285 / 3e-92 AT5G19160 514 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10002430 [exp] 285 / 2e-91 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10021328 [exp] 280 / 2e-90 AT3G11570 504 / 1e-178 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10034039 [exp] 279 / 1e-89 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10004225 [exp] 278 / 1e-89 AT3G11570 518 / 0.0 TRICHOME BIREFRINGENCE-LIKE 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.002G071900.1 pacid=42777197 polypeptide=Potri.002G071900.1.p locus=Potri.002G071900 ID=Potri.002G071900.1.v4.1 annot-version=v4.1 ATGATCGAGATGGTTGATAGTTTCAATCACTGGTCATTTGGCCATTTAAGGCCTTTTGTGAAAAGGGTCTTGAGTTTTGGCAAGGGAGTAGTAATAAAGG GTCATTGTAAATTCTGGATCTTTCAATCATTCAATGGAGTTGTTGTTGTTGGATCGTTGTTATCTTTCCTTTTAGCCATGGCATATGTATATGTGATTCT GTTTCCAAGATTTCAGCCAGTTATTAATAAGACGTATGAGACTCCCCATTTCAATAGTTCTGTAAGTGAGTGCAATTATTTTGAGGGAAACTGGATACAA GATGAGAGTTACCCTTTATATGATGCATCTCAGTGTCCTTTCGCTGAGAATGGATTTAATTGCTTGGCTAATGGGAGAAGAGACGGAGGTTATACAAAAT GGAGGTGGAAGCCTAAAAATTGTGAAATTCCGAGGTTTAATGCGCGTGAAATTCTTGAAAAGATGCGTGGGAAGCGAATTGTTTTTGTTGGTGATTCATT GAGTAGAACACAGTGGGAGTCTTTGATATGTATGCTCATGACAGGTGTGGAGGACAAGAGAAGTGTTTATGAAATCAATGGGAATAAAATCACCAAGCAG ATTAGGTTTTTAGGTGTACGGTTTAGTTCTTTTGACTTGAGAATTGATTTCTATAGATCAGTTTTTCTGGTGCAGCCTGGTCCGGCACCTAGGCGCGCGC CAAAGAGGGTTAAATCAACACTGAAGATCGATAAGTTGGACGATATTCGCAATGAATGGATTGATTCTGATATTCTAATATTTAATTCAGGGCATTGGTG GACACCGAGTAAACTTTTTGAAATGGGCTGTTATTTTCTGGTAGGCGGATCGCTGAAGCTAGGAATGCCTATCACTGCTGCCTTCGAAAGGGCACTGCAT ACATGGGCATCATGGCTTAATACTACCATAAATGCAAATAGAACAAGCGTGTTCTTCCGCACTTTTGAATCTTCCCATTGGAGTGGCCGGAACCGCCTTT CTTGCAAAGTGACTCGGCGGCCTTCATCAAGAACTGGAGGGAGGGATCGTAACCCGATATCTGACATCATAATCAAGGTTGTGAAGGCAATGGCAGTTCC CGTAACAGTTTTGCATGTGACACCCATGGGTGCATTCCGGAGTGATGCTCATGTTGGCACTTGGAGTGATAATCCATCTGTGCCTGATTGCAGCCACTGG TGCTTACCTGGTGTACCTGATATGTGGAACGAGATTCTCTTGTCAAATATGTTGTCCAGGAATTAA
AA sequence Show only first row Show all	>Potri.002G071900.1 pacid=42777197 polypeptide=Potri.002G071900.1.p locus=Potri.002G071900 ID=Potri.002G071900.1.v4.1 annot-version=v4.1 MIEMVDSFNHWSFGHLRPFVKRVLSFGKGVVIKGHCKFWIFQSFNGVVVVGSLLSFLLAMAYVYVILFPRFQPVINKTYETPHFNSSVSECNYFEGNWIQ DESYPLYDASQCPFAENGFNCLANGRRDGGYTKWRWKPKNCEIPRFNAREILEKMRGKRIVFVGDSLSRTQWESLICMLMTGVEDKRSVYEINGNKITKQ IRFLGVRFSSFDLRIDFYRSVFLVQPGPAPRRAPKRVKSTLKIDKLDDIRNEWIDSDILIFNSGHWWTPSKLFEMGCYFLVGGSLKLGMPITAAFERALH TWASWLNTTINANRTSVFFRTFESSHWSGRNRLSCKVTRRPSSRTGGRDRNPISDIIIKVVKAMAVPVTVLHVTPMGAFRSDAHVGTWSDNPSVPDCSHW CLPGVPDMWNEILLSNMLSRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Potri.002G071900 [exp]	0	1
AT3G58460		ATRBL15	RHOMBOID-like protein 15 (.1.2...		Potri.006G197900 [exp]	1.41	0.9409
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Potri.012G075600 [exp]	2.00	0.9337	Pt-ALDH10.1
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.006G035400 [exp]	3.87	0.9348	TUB17,TUB6.1
AT3G07950			rhomboid protein-related (.1)		Potri.010G220900 [exp]	4.00	0.9396
AT3G50760		GATL2	galacturonosyltransferase-like...		Potri.007G031700 [exp]	4.47	0.9242
AT5G19450		CPK8, CDPK19	calcium-dependent protein kina...		Potri.009G052700 [exp]	5.65	0.9187	CPK7.1
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Potri.015G124200 [exp]	5.74	0.9234
AT5G47730			Sec14p-like phosphatidylinosit...		Potri.006G004000 [exp]	5.91	0.9317	Pt-SSH1.2
AT1G09430		ACLA-3	ATP-citrate lyase A-3 (.1)		Potri.005G004900 [exp]	7.34	0.9243
AT4G30993			Calcineurin-like metallo-phosp...		Potri.006G187500 [exp]	8.24	0.8954

Compare expression of checked genes

Potri.002G071900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.