Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43790 47 / 3e-07 TED6 tracheary element differentiation-related 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G108100 [exp] 63 / 2e-12 AT5G48920 74 / 3e-16 tracheary element differentiation-related 7 (.1) Potri.005G060700 [exp] 59 / 9e-11 AT5G48920 73 / 2e-15 tracheary element differentiation-related 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018925 [exp] 59 / 2e-11 AT1G43790 54 / 4e-10 tracheary element differentiation-related 6 (.1) Lus10028626 [exp] 56 / 1e-09 AT5G48920 51 / 7e-08 tracheary element differentiation-related 7 (.1) Lus10029760 [exp] 49 / 4e-07 AT1G43790 55 / 8e-10 tracheary element differentiation-related 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G072000.1 pacid=42780059 polypeptide=Potri.002G072000.1.p locus=Potri.002G072000 ID=Potri.002G072000.1.v4.1 annot-version=v4.1 ATGGCCGCCTCCAATAATCTTGACTTCCCGTATTCCCCTCCACCACCAAGTCACTCTTTCCAGCCACCACCTTCACCTCCTCATGTACGCCCACCACCAC CTCATATCCGTCCACCTCCACCACCTCTGCCGCCTGCACCATCACCAAGTAACAACACCACAGTAATAGTCATTGTCTTTGTCTCATTTGGTGGCCTTAT ATTCCTTGCATTCCTTGCTGCTGCTCTTTGTTTCTTTATCAAGAAGAAAAAGAAGAAAACTGTTGAAGAAACTGATATTGTACATGTTCATGAACATTTG AAGGTGAAAGAGGCCATAGTAGAAGGACCTCACGGGCCAAAAGCCGTGGTGCTAGAGATTGTTGATGACGTGCATATCGGTGAAGAAATTAAGGAGGAGG AGAAGGTTGGCGAAGGTTTGCATGCTAAGGCTATAGAGGGGAATGCTGGTACCGTTGATCAGCTGGCAGCACCATCCTCTTCTGGTTCTAATAATCATTC CCGACTTGAACACAAGGCCTAA
AA sequence Show only first row Show all	>Potri.002G072000.1 pacid=42780059 polypeptide=Potri.002G072000.1.p locus=Potri.002G072000 ID=Potri.002G072000.1.v4.1 annot-version=v4.1 MAASNNLDFPYSPPPPSHSFQPPPSPPHVRPPPPHIRPPPPPLPPAPSPSNNTTVIVIVFVSFGGLIFLAFLAAALCFFIKKKKKKTVEETDIVHVHEHL KVKEAIVEGPHGPKAVVLEIVDDVHIGEEIKEEEKVGEGLHAKAIEGNAGTVDQLAAPSSSGSNNHSRLEHKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G43790		TED6	tracheary element differentiat...		Potri.002G072000 [exp]	0	1
AT5G05950		MEE60	maternal effect embryo arrest ...		Potri.009G038500 [exp]	4.00	0.8895
AT2G27930			PLATZ transcription factor fam...		Potri.009G003200 [exp]	4.58	0.8588
AT4G27290			S-locus lectin protein kinase ...		Potri.010G017900 [exp]	11.40	0.8744
AT1G26820		RNS3	ribonuclease 3 (.1)		Potri.008G086800 [exp]	13.49	0.8202	S.4
AT1G20850		XCP2	xylem cysteine peptidase 2 (.1...		Potri.002G005700 [exp]	13.85	0.8231
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Potri.006G248400 [exp]	14.79	0.6706
AT1G13195			RING/U-box superfamily protein...		Potri.010G053000 [exp]	15.00	0.8129
AT4G00080		UNE11	unfertilized embryo sac 11, Pl...		Potri.014G067500 [exp]	17.54	0.8764
AT1G64355			unknown protein		Potri.001G093001 [exp]	19.89	0.7521
AT5G61750			RmlC-like cupins superfamily p...		Potri.015G109600 [exp]	21.81	0.8092

Compare expression of checked genes

Potri.002G072000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.