Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77120 644 / 0 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) AT5G43940 444 / 3e-156 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G24760 396 / 3e-137 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) AT1G64710 371 / 4e-127 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G32780 363 / 3e-124 GroES-like zinc-binding dehydrogenase family protein (.1) AT5G42250 325 / 4e-109 Zinc-binding alcohol dehydrogenase family protein (.1) AT1G22440 311 / 7e-104 Zinc-binding alcohol dehydrogenase family protein (.1) AT4G22110 308 / 1e-102 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G22430 300 / 4e-99 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G63620 127 / 5e-33 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G108601 [exp] 658 / 0 AT1G77120 634 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108401 [exp] 655 / 0 AT1G77120 630 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060000 [exp] 654 / 0 AT1G77120 658 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060300 [exp] 652 / 0 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108500 [exp] 652 / 0 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060200 [exp] 652 / 0 AT1G77120 627 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108701 [exp] 639 / 0 AT1G77120 656 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.002G254900 [exp] 451 / 8e-159 AT5G43940 694 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.014G193800 [exp] 442 / 4e-155 AT5G43940 684 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010506 [exp] 656 / 0 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10029759 [exp] 655 / 0 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10042787 [exp] 653 / 0 AT1G77120 674 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10034042 [exp] 653 / 0 AT1G77120 672 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10029757 [exp] 571 / 0 AT1G77120 602 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10022853 [exp] 426 / 1e-146 AT5G43940 700 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10000496 [exp] 422 / 2e-146 AT5G43940 693 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10031890 [exp] 338 / 1e-114 AT5G24760 566 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) Lus10004786 [exp] 335 / 5e-113 AT1G22430 529 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10033241 [exp] 323 / 8e-108 AT1G32780 511 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00107 [poplar] [flax] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [poplar] [flax] GroES PF08240 [poplar] [flax] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Potri.002G072100.1 pacid=42779266 polypeptide=Potri.002G072100.1.p locus=Potri.002G072100 ID=Potri.002G072100.1.v4.1 annot-version=v4.1 ATGTCTAGCACAGTTGGTAAAGTCATTCGCTGCAAAGCCGCGGTGGCATGGGAAGCAGCGAAGCCACTGTCGATTGAAGAAGTGGAAGTGGCTCCACCAC AGGCTAATGAAGTTCGCTTGAGGATCCTCTTTACCTCTTTATGCCACACCGATGTTTACTTTTGGGAAGCTAAGGGACAAACACCTCTGTTTCCACGCAT ATTCGGTCATGAAGCTGGAGGAATTGTAGAGAGCGTAGGTCCTGGTGTGACTGATCTCCAGCCAGGTGACCATGTCCTACCAGTATTCACTGGGGAGTGT GGGGATTGCAGACACTGTAAATCAGAAGAAAGCAACATGTGTGATCTCCTCAGGATCAATACTGATAGGGGTGTTATGCTCACTGATGGAAAATCAAGGT TCTCTATCAACGGAAAGCCAATTTACCATTTTGTTGGCGGTTCCACATTTAGTGAATACACCGTCTGCCATATTGGGTCTGTTGCCAAGATCAACCCTGC TGCCCCTCTAGACAAAGTTTGTATTCTTAGCTGTGGAATATCAACAGGCCTTGGCGCAGCTTTGAATGTTGCAAAACCAAAGAAGGGCCACACTGTTGCG GTTTTTGGACTGGGTGCCGTTGGTCTCGCTGCTGCTGAGGGAGCAAGGTTATCAGGGGCTTCGAGGATTATTGGGGTTGATTTGAACCCCAGCAGATTCA ATGAAGCAAAGAAGTTTGGTGTTACTGAGTTAGTAAACCCAAAAGATCATGACAAGCCTGTTCAACAGGTGATTATCGAGATGACTGATGGAGGAGTTGA TCGGAGTATTGAGTGCACAGGAAATGTCCAAGCCATGATCTCAGCATTTGAATGTGTTCATGACGGTTGGGGTGTTGCAGTGCTTGTTGGTGTCCCGGGC AAAGATGATGAATTCAAGACCCACCCAATGAATCTGTTAAATGAGAGGACCCTTAAAGGGACCTTCTTTGGCAACTACAAGCCTCGCACTGATCTTCCTG GCGTGGTGGAAAAATATATGAATAAGGAGCTGGAAGTGGAGAAATTCATCACTCACTCTATTCCCTTCTCGGAGATTAATAAAGCATTTGATTACATGCT GAAAGGAGAGGGTCTGAGGTGCATTATTCGCATGGAGGGTTAG
AA sequence Show only first row Show all	>Potri.002G072100.1 pacid=42779266 polypeptide=Potri.002G072100.1.p locus=Potri.002G072100 ID=Potri.002G072100.1.v4.1 annot-version=v4.1 MSSTVGKVIRCKAAVAWEAAKPLSIEEVEVAPPQANEVRLRILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGPGVTDLQPGDHVLPVFTGEC GDCRHCKSEESNMCDLLRINTDRGVMLTDGKSRFSINGKPIYHFVGGSTFSEYTVCHIGSVAKINPAAPLDKVCILSCGISTGLGAALNVAKPKKGHTVA VFGLGAVGLAAAEGARLSGASRIIGVDLNPSRFNEAKKFGVTELVNPKDHDKPVQQVIIEMTDGGVDRSIECTGNVQAMISAFECVHDGWGVAVLVGVPG KDDEFKTHPMNLLNERTLKGTFFGNYKPRTDLPGVVEKYMNKELEVEKFITHSIPFSEINKAFDYMLKGEGLRCIIRMEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.002G072100 [exp]	0	1
AT5G47920			unknown protein		Potri.014G140000 [exp]	1.41	0.6633
AT4G33440			Pectin lyase-like superfamily ...		Potri.007G105800 [exp]	8.00	0.6360
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Potri.016G030100 [exp]	8.12	0.6444
AT1G67420			Zn-dependent exopeptidases sup...		Potri.010G060500 [exp]	12.40	0.5913
AT5G08570			Pyruvate kinase family protein...		Potri.008G002500 [exp]	20.49	0.5782
AT2G43080		AT-P4H-1	P4H isoform 1 (.1)		Potri.002G232100 [exp]	24.33	0.5842
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Potri.007G055100 [exp]	27.33	0.5841
AT3G14160			2-oxoglutarate-dependent dioxy...		Potri.003G070100 [exp]	27.65	0.6008
AT1G79440		ENF1, SSADH1, A...	SUCCINIC SEMIALDEHYDE DEHYDROG...		Potri.010G174000 [exp]	37.96	0.5793	Pt-ALDH5.2
AT5G10860		CBSX3	CBS domain containing protein ...		Potri.017G000100 [exp]	38.34	0.5683

Compare expression of checked genes

Potri.002G072100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.