Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77090 345 / 2e-120 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) AT3G56650 84 / 4e-19 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) AT3G63540 52 / 4e-08 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G034300 [exp] 86 / 2e-19 AT3G56650 372 / 1e-130 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Potri.009G062500 [exp] 57 / 2e-09 AT3G63540 240 / 1e-81 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018931 [exp] 353 / 6e-124 AT1G77090 359 / 1e-126 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10028633 [exp] 351 / 7e-123 AT1G77090 348 / 3e-122 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10042812 [exp] 85 / 4e-19 AT3G56650 346 / 3e-121 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10029785 [exp] 85 / 4e-19 AT3G56650 343 / 4e-120 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10016419 [exp] 54 / 2e-08 AT3G63540 243 / 1e-82 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10030326 [exp] 42 / 0.0004 AT3G55330 268 / 7e-91 PsbP-like protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0619 [poplar] [flax] Mog1p_PsbP PF01789 [poplar] [flax] PsbP PsbP
Representative CDS sequence Show only first row Show all	>Potri.002G072400.1 pacid=42779185 polypeptide=Potri.002G072400.1.p locus=Potri.002G072400 ID=Potri.002G072400.1.v4.1 annot-version=v4.1 ATGGGAACCACCTTACTCACCAGCTGTGGTATTCAATGGAGATATCATCACCAACAAATAGTTCCTGACAACCATTTGCTCAGTCATTCACAAGAAAGCT TCCCATCAAGAGCTAAAATAACAGCAGAATCCAGAAAGAATGGCTTTCTTGATGGAGAAAATGAGAAATCCGCCGGGTTTTTGAAGAGAAGGTCAGTTTT GGTTTCTGGGGTTTCTTTGGTTTCAACTTCAGTTTTGGGATCTGCAGGAGAAGGGCTGGCAGTTGTGAAACAAGGCCTTTTAGCAGGAAGAATACCTGGC TTATCTGAACCTGATGACCAAGGTTGGAGGACATACCGCAGGCCAGATGACAAGTCTGGGGGGCATGGTGTTGGATGGAGTCCAATCATCCCTTATCTTT TTTCTGTGCCTCAAGGTTGGGAAGAGGTTCCAGTATCAATAGCAGATCTTGGTGGCACAGAAATCGATTTGAGATTTGGCAGCTCCAAGGAAGGACGCCT TTTTGTCATTGTAGCTCCTGTTCTCAGATTTGCAGATTATCTTGGTGAAAATGCTACAATCGAACAAATTGGACCTCCAGAGAAAGTAATTAACGCTTTT GGTCCAGAAGTAATTGGAGAGAATGTAGAAGGGAAGGTTCTAAGCATGAATGTAGAAGAACATTCTGGAAGAAGATATTACCAGTACGAGCTAGAGCCAC CTCATGCACTGATCACTGCAACTGCAGCGGGAAATCGCCTCTACTTGTTCAATGTCACTGGGAATGGTCTTCAGTGGAAGAGACACTACCAGGATCTGAA GAGGATAGCATACTCCTTTCGAGTTGTCTAG
AA sequence Show only first row Show all	>Potri.002G072400.1 pacid=42779185 polypeptide=Potri.002G072400.1.p locus=Potri.002G072400 ID=Potri.002G072400.1.v4.1 annot-version=v4.1 MGTTLLTSCGIQWRYHHQQIVPDNHLLSHSQESFPSRAKITAESRKNGFLDGENEKSAGFLKRRSVLVSGVSLVSTSVLGSAGEGLAVVKQGLLAGRIPG LSEPDDQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQGWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVLRFADYLGENATIEQIGPPEKVINAF GPEVIGENVEGKVLSMNVEEHSGRRYYQYELEPPHALITATAAGNRLYLFNVTGNGLQWKRHYQDLKRIAYSFRVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77090			Mog1/PsbP/DUF1795-like photosy...		Potri.002G072400 [exp]	0	1
AT4G01935			unknown protein		Potri.014G117500 [exp]	2.64	0.9310
AT1G31170		ATSRX	sulfiredoxin (.1.2.3.4)		Potri.012G124500 [exp]	3.46	0.9200
AT5G20060			alpha/beta-Hydrolases superfam...		Potri.018G070700 [exp]	4.24	0.9067
AT5G53280		PDV1	plastid division1 (.1)		Potri.015G022900 [exp]	5.00	0.8895
AT5G59400			unknown protein		Potri.001G241400 [exp]	5.09	0.9011
AT5G20130			unknown protein		Potri.016G013500 [exp]	5.29	0.9001
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Potri.003G219000 [exp]	8.00	0.9287
AT2G30170			Protein phosphatase 2C family ...		Potri.001G282500 [exp]	8.66	0.9188
AT4G09830			Uncharacterised conserved prot...		Potri.001G003400 [exp]	12.56	0.8681
AT1G52590			Putative thiol-disulphide oxid...		Potri.008G213200 [exp]	12.64	0.8988

Compare expression of checked genes

Potri.002G072400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.