Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21470 565 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G29230 370 / 2e-121 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G45350 360 / 2e-117 CRR4 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 341 / 5e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G35030 335 / 2e-107 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 335 / 2e-106 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 330 / 7e-105 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G44880 320 / 9e-103 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G14820 324 / 3e-102 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G22760 320 / 4e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G125500 [exp] 375 / 2e-123 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G116100 [exp] 362 / 1e-118 AT4G22760 669 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G068800 [exp] 354 / 9e-115 AT2G45350 735 / 0.0 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 355 / 7e-114 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G105700 [exp] 349 / 3e-112 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G048800 [exp] 350 / 1e-111 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G086200 [exp] 348 / 1e-111 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 347 / 8e-111 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G128900 [exp] 345 / 1e-110 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019797 [exp] 356 / 1e-115 AT3G29230 768 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014113 [exp] 351 / 6e-114 AT3G29230 767 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028907 [exp] 342 / 2e-110 AT4G22760 632 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031661 [exp] 341 / 4e-110 AT2G29760 427 / 3e-141 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003422 [exp] 335 / 5e-108 AT2G44880 679 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10018223 [exp] 338 / 2e-107 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 337 / 5e-107 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015874 [exp] 329 / 2e-105 AT2G45350 687 / 0.0 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 332 / 7e-105 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 330 / 1e-104 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.002G072500.2 pacid=42777655 polypeptide=Potri.002G072500.2.p locus=Potri.002G072500 ID=Potri.002G072500.2.v4.1 annot-version=v4.1 ATGTGTACAAGCCATGAAGAAAACAACTTTATACCACAAGAAATCATACACTATCCTCAAAAACAAATTCAATACTACAAATATCAATACTCTCAACTTT GCCCTGCAACTACAAACCCCAGTTGGTCTTCCTGTATAAGAAAACACGTCTCTAATGGATCATACAGAGAAGCTATTGTTTTATACAATCAAATCCGCAG CAAAGGAGTGTACTTTTTGGGATTAGTCCCTTTAGTCCTTAAAGCTTGTGCTTATGTTTCCGTGCTGAATTGTGGGAAATCTTTGCACGGTGAAGCAATA AAGCATGGAGTAGATTCTAATGTACGTATTGGGACATCATTGGTTTCTATGTATGCAAAATGTGGTGATATACCCGATTCGCGTAAGCTGTTTGAGTATA TGCCTGAGAGAAATGTTGTGACATGGAATGCCATGATTAGTGGGTATGGTAAGAATGGGGACATGAAATCAGCATCAGTTTTGTTTGACAAAATGTCGAC CAGAAATGCGGTTTCTTGGATTGAAATGATAGATGGGTTTGCCAGAAGTGGAGATATGGTTGCCGCTAGGCGTACGTTCAATGAGGTACCTTTTGAATTG AAAAATGTGGTGACTTGGACTGTGATGATTGATGGGTATGCGAGCAAAGGAGAGATGGAAGCTGCAAGATTGCTTTTTGAAGACATGCCACAGAGGAATT TCTTTGTCTGGTCGTCCATGATTTCAGGGTATTGTAAGATAGGTAATGTTAAGGAGGCGAGGGCTATTTTTGATCGTGTTCCAGTTAGGAACTTGGTGAA CTGGAATTCTTTGATTTGTGGTTACTCGCAGAATGGGTTTTGTGAGGAAGCTTTGGATGCCTTTGGGAAGATGCAAAATGAGGGTTATGAACCTGATGAA GTTACAGTTGTGGGTGTTTTATCTGCTTGTGCCCAGTTGAGTCTACTGGATGTTGGTAAAGATGTGCATAAGATGATATGTGCGAAAGGGATGAAGCTTA ATGAGTTTGTTGTGAATGCGTTAGTGGATATGTATGCGAAATGTGGGGATTTAACTGGTGCCCGATTGATCTTTGAACGAATGACCAATAAAAATAATGC CTGTTGGAATTCTATGATATCAGGCTTTGCCGTTCATGGGAAAACCAAAGAGGCACTAGAGTTCTTCGGGAGAATGGAAGAGTCAAATGAGAAGCCTGAC GAAATAACCTTTCTGTCTGTTCTCTCGGCTTGTGTTCATGGGGGATTTGTAGAAGTTGGTTTGGAAATTTTTTCTAAGATGGAGAGATACGGGTTGTCAG CAAGTATCAAGCACTATGGCTGTCTGGTTGATCTTTTGGGGCGAGCAGGAAGAATACAGGATGCTTATCATTTGATCAAGAGTATGCCAATGAAACCAAA TGATACGGTTTGGGGTGCTTTCCTTGGAGCTTGTCGAATTCATATGGATAATGATATGGTGGAGCAGGTGGTAGAAGATGTTTGCACATCGGATTCTAGT GTTGATTCTGGAAATGATCCTCATTATGCTTTGTTGTTGAACATATATGCTGGTTCTGGTAGCTGGGAGAAGGCTGGAAGGGTGAGTATGGTCATGGCGG ATAGAGGGCTTCAAAAGACTTCTGGACGCAGCTCACTTATGCTTGAAAATACAGAACAGTTTCATATCTGA
AA sequence Show only first row Show all	>Potri.002G072500.2 pacid=42777655 polypeptide=Potri.002G072500.2.p locus=Potri.002G072500 ID=Potri.002G072500.2.v4.1 annot-version=v4.1 MCTSHEENNFIPQEIIHYPQKQIQYYKYQYSQLCPATTNPSWSSCIRKHVSNGSYREAIVLYNQIRSKGVYFLGLVPLVLKACAYVSVLNCGKSLHGEAI KHGVDSNVRIGTSLVSMYAKCGDIPDSRKLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTRNAVSWIEMIDGFARSGDMVAARRTFNEVPFEL KNVVTWTVMIDGYASKGEMEAARLLFEDMPQRNFFVWSSMISGYCKIGNVKEARAIFDRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKMQNEGYEPDE VTVVGVLSACAQLSLLDVGKDVHKMICAKGMKLNEFVVNALVDMYAKCGDLTGARLIFERMTNKNNACWNSMISGFAVHGKTKEALEFFGRMEESNEKPD EITFLSVLSACVHGGFVEVGLEIFSKMERYGLSASIKHYGCLVDLLGRAGRIQDAYHLIKSMPMKPNDTVWGAFLGACRIHMDNDMVEQVVEDVCTSDSS VDSGNDPHYALLLNIYAGSGSWEKAGRVSMVMADRGLQKTSGRSSLMLENTEQFHI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21470			Pentatricopeptide repeat (PPR-...		Potri.002G072500 [exp]	0	1
AT2G25970			KH domain-containing protein (...		Potri.006G231800 [exp]	3.74	0.8323
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Potri.010G171300 [exp]	4.24	0.8639
AT2G28605			Photosystem II reaction center...		Potri.005G068500 [exp]	6.24	0.8513
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Potri.008G105200 [exp]	7.34	0.8326	Pt-PHYB.1
AT3G25060			Tetratricopeptide repeat (TPR)...		Potri.002G245200 [exp]	8.66	0.8659
AT3G04130			Tetratricopeptide repeat (TPR)...		Potri.010G055500 [exp]	11.48	0.8230
AT3G18840			Tetratricopeptide repeat (TPR)...		Potri.004G152000 [exp]	12.64	0.8261
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.013G154300 [exp]	17.32	0.8413
AT1G02060			Tetratricopeptide repeat (TPR)...		Potri.014G056400 [exp]	26.00	0.8034
AT5G44230			Pentatricopeptide repeat (PPR)...		Potri.005G119000 [exp]	27.85	0.8320

Compare expression of checked genes

Potri.002G072500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.