Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SEU.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43850 569 / 0 SEU SEUSS transcriptional co-regulator (.1.2) AT5G62090 333 / 1e-100 SLK2 SEUSS-like 2 (.1.2) AT4G25515 325 / 3e-99 SLK3 SEUSS-like 3 (.1) AT4G25520 320 / 2e-96 SLK1 SEUSS-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G186900 [exp] 1181 / 0 AT1G43850 612 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.007G109400 [exp] 635 / 0 AT1G43850 546 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.012G136100 [exp] 360 / 2e-110 AT5G62090 536 / 1e-178 SEUSS-like 2 (.1.2) Potri.015G138500 [exp] 358 / 8e-110 AT5G62090 551 / 0.0 SEUSS-like 2 (.1.2) Potri.003G121800 [exp] 301 / 6e-90 AT5G62090 357 / 1e-111 SEUSS-like 2 (.1.2) Potri.013G089900 [exp] 223 / 1e-67 AT1G43850 172 / 6e-50 SEUSS transcriptional co-regulator (.1.2) Potri.005G058501 [exp] 223 / 8e-64 AT1G43850 158 / 2e-41 SEUSS transcriptional co-regulator (.1.2) Potri.001G355900 [exp] 84 / 1e-19 AT1G43850 49 / 3e-08 SEUSS transcriptional co-regulator (.1.2) Potri.010G052150 [exp] 73 / 3e-15 AT1G43850 49 / 9e-08 SEUSS transcriptional co-regulator (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042785 [exp] 917 / 0 AT1G43850 721 / 0.0 SEUSS transcriptional co-regulator (.1.2) Lus10029756 [exp] 910 / 0 AT1G43850 721 / 0.0 SEUSS transcriptional co-regulator (.1.2) Lus10028635 [exp] 578 / 0 AT1G43850 518 / 5e-174 SEUSS transcriptional co-regulator (.1.2) Lus10018933 [exp] 494 / 1e-165 AT1G43850 435 / 1e-143 SEUSS transcriptional co-regulator (.1.2) Lus10038880 [exp] 354 / 5e-108 AT5G62090 557 / 0.0 SEUSS-like 2 (.1.2) Lus10006324 [exp] 243 / 3e-70 AT5G62090 277 / 9e-84 SEUSS-like 2 (.1.2) Lus10015002 [exp] 248 / 7e-70 AT5G62090 439 / 3e-143 SEUSS-like 2 (.1.2) Lus10000198 [exp] 147 / 4e-38 AT5G62090 174 / 8e-48 SEUSS-like 2 (.1.2) Lus10029594 [exp] 124 / 4e-29 AT1G43850 140 / 9e-35 SEUSS transcriptional co-regulator (.1.2) Lus10029753 [exp] 72 / 2e-15 AT1G43850 42 / 9e-06 SEUSS transcriptional co-regulator (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01803 [poplar] [flax] LIM_bind LIM-domain binding protein
Representative CDS sequence Show only first row Show all	>Potri.002G072900.2 pacid=42777734 polypeptide=Potri.002G072900.2.p locus=Potri.002G072900 ID=Potri.002G072900.2.v4.1 annot-version=v4.1 ATGTTACCCTCGGGGCCGCCTACTCCAATTGGTGGTGCCCAGTCTGTCTCTCCTTCACTTTTGAGATCGAATTCGGGGATGCTGGGAGCTCAAGGTGGCC CTTTGGGTTCTCAAACAGCCTTCCCGTCTCTAGTGTCCCCCCGTACTCAGTTTAATAACATGAGCATGCTTGGAAATGTGCCCAACATGTCCTCCCTGCT GAACCAGTCTTTTGGTAATGGAGGTCCAAATCCTGGACTTCCTGGCCCTGGGAGCAGTCAGCGCGGAAATATTGATACTGGGGCAGAGTCCGATCCACTT TCAAATGGTGGTAATGGAATGGGTTTCAATGCTCCTTCATCGTCATTTGTACCATCAAATATGGTTAACCCTGGTCCTTCTTGTCAAGTTCAGGGACATC AGTTTTCAAACCCTTCTGGCAACCAGTTGTTGCCAGATCAACAGCAGTCCCAACAACTTGAAGCACAAAATTTCCAGCATGGTCAGCAATCAATGCAACA GTTCTCTGGCGCTCATAACACTCAGCAGGTGCAGCAGCAGCACCAGTTTCAATCAATACGAGGAGGGTTGGCTGGTGTTGGACCTGTTAAGTTGGAGCCA CATGTGACTAATGATCAACATGGAGCACGGCAACTGCAACAACCTCAGCCACTGAGAAATATGGGTCCAGTTAAGTTGGAGCACCAGCAAATTCAGACGA TGCGAAGTTTGCCAACTGTGAAGTTGGAACCTCAACATTCAGATCAATCTTTGTTTTTACATCAACAGCAACAACATCAGCAGCAACAGCAGCAGCATCA TCATCATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGTTCCTTCACATGTCAAGGCAGTCTTCTCAGCAGGCTGTTGCACAACTA AATCTTTTGCATCAGCAAAGGCTGCTGCAGCAACAGCAACTTTTGAAGGCAATGCCACAGCAACGGCCTCAATTACCACAACAATTTCAACAACAGAATA TACCTTTGAGGTCTCCTGTAAAACCAGTGTATGAACCTGGGATGTGTGCCCGTCGTCTCACAAATTACATGCATCAACAGCAGCGCAGACCTGAAGACAA TAACATAGAATTCTGGAGGAAATTTGTTGCTGAGTTCTTTGCTCCCCATGCAAAAAAGAAGTGGTGTGTTTCTATGTACGGAAGTGGCCGGCAAACAACT GGTGTTTTCCCTCAGGACGTATGGCATTGTGAGATTTGCAATCGCAAGCCAGGCCGTGGTTTTGAGGCAACTGTTGAGGTTCTTCCTAGGCTTTTCAAAA TCAAATATGAAAGTGGCACTTTGGAAGAACTTCTTTATGTTGATATGCCACGTGAATATCAAAACTCATCTGGTCAAATTGTCCTGGATTATGCAAAAGC AATACAAGAGAGTGTTTTTGAGCAACTTCGCGTTGTTCGTGATGGTCAGCTGCGGATAGTCTTCTCCCCAGACTTGAAGATATGCTCTTGGGAGTTTTGT GCTCGGCGCCATGAAGAGCTAATACCTCGAAGATTGTTGATACCACAGGTAAGTCAGCTTGGTGCTGCAGCTCAAAAGTACCAGGCTGCTACTCAAAATG CATCATCCAATTTATCTGTCCCGGAGTTGCAAAATAATTGTAACTTGTTTGTTGCATCAGCTCGGCAACTGGCAAAAGCCTTGGAAGTGCCATTAGTAAA TGATCTGGGATATACAAAGAGATATGTGCGGTGCCTTCAGATATCAGAAGTGGTAAATAGTATGAAAGACTTGATTGATTATAGTCGAGAAACAGGAACT GGACCAATGGAGAGTTTGTCCAAGTTCCCTAGGAGGACAGGTGCTTCAATTGGGTTCCATAGTCAAGCACAACAGCCTGAGGAACAGCAACAACAACAGC AAACAATAACTGCGAACTCAAATAGTGATCAAAGTTCTGCCCAAGCCACAATGCAAATTGCTGCTAGCAATGGTATGGCTAGTGTAAATAACTCACTCAA CACAGCATCTACAACTACCTATGCCAGCGCTATTGTTGGGCTTGTCCACCAAAATTCTATGAATTCAAGACAACAAAATTCTATCAATAATGCAAGCAGT CCCTATGGAGGAAACTCTGTTCAGATTCCATCTCCTGGTTCCTCCAGTACGATTCCACAAGCACAACCTAACCCTTCTCCTTTCCAGTCGCCAACACCGT CCTCGTCTAATAATCCTCCACAAGCATCTCATAGTGCCTTGACAGCTGTGAATCACATTAGTTCCACAAATTCACCAGCAAATATTCCGTTGCAACAGCC AACTCTTTCTGGCGAGGCTGACCATGGTGATTCTCAAAGCTCTGTCCAGAAATTTTTACATGAAATGATGTTAACCAGTCAACTTAATGGAACTGGTGGC ATGGTTGGGGTTGGTTCGTTGGGGAATGAAGTGAAAAATGTCAATGGAATTTTGCCAACAGGTAATAATACGGTTCTTAATGGTGGAAATGGCCTGGTGG GAAATGGGGCAGTCAATAGTTCTGGAATAGGGGGTGCTGGATATGGGACTATGGGTGGACTTGCGCAGTCTGTAATGGTCAATGGGATCAGAGCTGCAAT GGGTAATAACTCAATGATGAATGGTCGGATGGGCATGCCATCGATGGTACGAGACCAGAGCATGAATCATCAACAGGATTTGGGGAACCAACTGCTTAGT GGGCTAGGAGCAGTTAATGGGTTTAGTAATCTCCAGTTTGATTGGAAACCATCCCCTTGA
AA sequence Show only first row Show all	>Potri.002G072900.2 pacid=42777734 polypeptide=Potri.002G072900.2.p locus=Potri.002G072900 ID=Potri.002G072900.2.v4.1 annot-version=v4.1 MLPSGPPTPIGGAQSVSPSLLRSNSGMLGAQGGPLGSQTAFPSLVSPRTQFNNMSMLGNVPNMSSLLNQSFGNGGPNPGLPGPGSSQRGNIDTGAESDPL SNGGNGMGFNAPSSSFVPSNMVNPGPSCQVQGHQFSNPSGNQLLPDQQQSQQLEAQNFQHGQQSMQQFSGAHNTQQVQQQHQFQSIRGGLAGVGPVKLEP HVTNDQHGARQLQQPQPLRNMGPVKLEHQQIQTMRSLPTVKLEPQHSDQSLFLHQQQQHQQQQQQHHHHQQQQQQQQQQQQQQQFLHMSRQSSQQAVAQL NLLHQQRLLQQQQLLKAMPQQRPQLPQQFQQQNIPLRSPVKPVYEPGMCARRLTNYMHQQQRRPEDNNIEFWRKFVAEFFAPHAKKKWCVSMYGSGRQTT GVFPQDVWHCEICNRKPGRGFEATVEVLPRLFKIKYESGTLEELLYVDMPREYQNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFC ARRHEELIPRRLLIPQVSQLGAAAQKYQAATQNASSNLSVPELQNNCNLFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRETGT GPMESLSKFPRRTGASIGFHSQAQQPEEQQQQQQTITANSNSDQSSAQATMQIAASNGMASVNNSLNTASTTTYASAIVGLVHQNSMNSRQQNSINNASS PYGGNSVQIPSPGSSSTIPQAQPNPSPFQSPTPSSSNNPPQASHSALTAVNHISSTNSPANIPLQQPTLSGEADHGDSQSSVQKFLHEMMLTSQLNGTGG MVGVGSLGNEVKNVNGILPTGNNTVLNGGNGLVGNGAVNSSGIGGAGYGTMGGLAQSVMVNGIRAAMGNNSMMNGRMGMPSMVRDQSMNHQQDLGNQLLS GLGAVNGFSNLQFDWKPSP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.002G072900 [exp]	0	1	SEU.1
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.006G013000 [exp]	2.00	0.8582
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Potri.010G068400 [exp]	3.46	0.8544
AT5G63520			unknown protein		Potri.015G098700 [exp]	4.89	0.8296
AT3G19860	bHLH	bHLH121	basic Helix-Loop-Helix 121, ba...		Potri.009G129600 [exp]	5.91	0.8408
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Potri.004G225800 [exp]	6.00	0.7739
AT3G22430			unknown protein		Potri.010G087400 [exp]	6.92	0.8539
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Potri.010G091200 [exp]	7.41	0.8507
AT1G75010		ARC3	ACCUMULATION AND REPLICATION O...		Potri.010G099300 [exp]	7.48	0.8349
AT4G25280			P-loop containing nucleoside t...		Potri.015G129000 [exp]	8.94	0.7996
AT5G17510			unknown protein		Potri.013G076800 [exp]	9.38	0.8323

Compare expression of checked genes

Potri.002G072900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.