Plant FIBer expression Database

Potri.002G073200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G43860 561 / 0 sequence-specific DNA binding transcription factors (.1)
AT4G31420 44 / 0.0001 C2H2ZnF Zinc finger protein 622 (.1.2)
AT2G24500 41 / 0.0007 C2H2ZnF FZF Zinc finger protein 622 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G186700
[exp]
625 / 0 AT1G43860 513 / 0.0 sequence-specific DNA binding transcription factors (.1)
Potri.018G006300
[exp]
43 / 0.0003 AT4G31420 463 / 1e-162 Zinc finger protein 622 (.1.2)
Potri.006G275300
[exp]
42 / 0.0006 AT4G31420 459 / 2e-161 Zinc finger protein 622 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042780
[exp]
584 / 0 AT1G43860 545 / 0.0 sequence-specific DNA binding transcription factors (.1)
Lus10029749
[exp]
577 / 0 AT1G43860 539 / 0.0 sequence-specific DNA binding transcription factors (.1)
Lus10020150
[exp]
45 / 5e-05 AT4G31420 506 / 8e-180 Zinc finger protein 622 (.1.2)
Lus10026949
[exp]
45 / 8e-05 AT4G31420 508 / 3e-180 Zinc finger protein 622 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01172 SBDS Shwachman-Bodian-Diamond syndrome (SBDS) protein
CL0437 EF-G_C PF09377 SBDS_C SBDS protein C-terminal domain
Representative CDS sequence
>Potri.002G073200.1 pacid=42777135 polypeptide=Potri.002G073200.1.p locus=Potri.002G073200 ID=Potri.002G073200.1.v4.1 annot-version=v4.1
ATGTCGGTGAAGTTGCTGCAGCCGGTAGGGCAAAAACGGTTGACGAACGTAGCAGTGGTTCGATTAAAGAAGCATGGTATGCGTTTCGAGATTGCTTGTT
ACAAGAACAAGGTCCTCTCTTGGCGCTCTGGCGTAGAGAAAGATTTGGATGAAGTGTTGCAGTCCCACACAGTTTATTCAAATGTTTCAAAAGGAGTTCT
TGCAAAGAATTCAGATTTGGTTAAAGCTTTTGGACACGATGATCATACCAAGATCTGCCTAGAGATATTGGAGAAAGGGGAGCTTCAAGTGGCTGGGAAA
GAGAGGGATTCTCAGTTGTCTAGTCAGTTTCGGGATATAGCAACTATTGTTATGCAGAAAACTATTAATCCCGAGACGCAACGTCCTTACACTATCAGTA
TGGTTGAGAGATTGATGCATGAAATTCACTTTGCTGTTGACCCGCATAGCAGCTCTAAGAAGCAGGCGCTAGATGTTATTCGTGAGCTTCAAAAGCATTT
TCCAATCAAACGGTCTCCAATGAGACTTCGGCTTGCTGTTATTGGACAGAAGTTTCCTAATCTATTGGAAAAGCTCAATGCCTGGGATGCTAACGTTGTT
TCTAAAGATGAATCTGGAAGCCATCAATCTGTTATTTGTGAAATGGACCCAGGTTTCTTCAGGGACTGTGATGCCTTAGTGAGGAATCTGCAGGGCAGGA
TGGAAATTCTTGCAGTGTCTGTTCATTTTGAGGGGGACACCCATGTAGATGACTTTGATGATTATGAAGATGTGCCACCAGCCCTACCCAAGGAGTCTGC
TGATTCTGAAGTACAACTGAGTGAGAAAATCCAAAAACAGACCATCTCTGAGGAGAAGAAGGCTGACACGCTGGCAAAGCAAAACAAGTGCAGCACATGC
AATGCATTTGTTGGGGATGCAAAGCAGTTCAGGGATCACTTCAAGAGTGACTGGCACAAACATAATTTGAAGCGCAAGACCAAGCAGCTCCCACCGCTCA
CTGCAGAAGAGTGTTTGGCTGACATGGACCTGAATGACTCTAAAGCAGATTTAAAAGAATACTCGTTTTGA
AA sequence
>Potri.002G073200.1 pacid=42777135 polypeptide=Potri.002G073200.1.p locus=Potri.002G073200 ID=Potri.002G073200.1.v4.1 annot-version=v4.1
MSVKLLQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSGVEKDLDEVLQSHTVYSNVSKGVLAKNSDLVKAFGHDDHTKICLEILEKGELQVAGK
ERDSQLSSQFRDIATIVMQKTINPETQRPYTISMVERLMHEIHFAVDPHSSSKKQALDVIRELQKHFPIKRSPMRLRLAVIGQKFPNLLEKLNAWDANVV
SKDESGSHQSVICEMDPGFFRDCDALVRNLQGRMEILAVSVHFEGDTHVDDFDDYEDVPPALPKESADSEVQLSEKIQKQTISEEKKADTLAKQNKCSTC
NAFVGDAKQFRDHFKSDWHKHNLKRKTKQLPPLTAEECLADMDLNDSKADLKEYSF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G43860 sequence-specific DNA binding ... Potri.002G073200
[exp]
0 1
AT5G13070 MSF1-like family protein (.1) Potri.001G018500
[exp]
3.46 0.7618
AT5G48970 Mitochondrial substrate carrie... Potri.008G210000
[exp]
4.89 0.7582
AT2G47580 U1A spliceosomal protein U1A (.1) Potri.002G203600
[exp]
5.65 0.7718
AT5G17530 phosphoglucosamine mutase fami... Potri.010G223000
[exp]
7.34 0.8030
AT5G22350 ELM1 ELONGATED MITOCHONDRIA 1, Prot... Potri.016G075500
[exp]
7.34 0.7444
AT2G33735 Chaperone DnaJ-domain superfam... Potri.002G103900
[exp]
11.48 0.7270
AT5G63520 unknown protein Potri.015G098800
[exp]
15.19 0.7504
Potri.001G016032
[exp]
17.94 0.6735
AT1G26690 emp24/gp25L/p24 family/GOLD fa... Potri.008G090700
[exp]
18.24 0.6810
AT2G40340 AP2_ERF AtERF48, DREB2C Integrase-type DNA-binding sup... Potri.008G073600
[exp]
19.59 0.7648 DREB8,Pt-DREB2.4

Potri.002G073200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.