Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17950 202 / 9e-64 MYB AtMYB52, BW52, MYB52 myb domain protein 52 (.1) AT1G69560 197 / 7e-61 MYB LOF2, ATMYB105 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) AT1G26780 192 / 2e-59 MYB LOF1, ATMYB117 LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2) AT4G33450 191 / 3e-59 MYB ATMYB69 myb domain protein 69 (.1) AT1G73410 190 / 6e-59 MYB AtMYB54, BW54, MYB54 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 54, myb domain protein 54 (.1) AT5G17800 187 / 6e-57 MYB ATMYB56 myb domain protein 56 (.1) AT3G29020 183 / 1e-56 MYB ATMYB110 myb domain protein 110 (.1.2) AT5G39700 137 / 4e-39 MYB ATMYB89 myb domain protein 89 (.1) AT2G39880 135 / 8e-37 MYB ATMYB25 myb domain protein 25 (.1) AT5G67300 134 / 9e-37 MYB ATMYB44, AtMYBr1 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G186400 [exp] 497 / 1e-178 AT1G17950 197 / 1e-61 myb domain protein 52 (.1) Potri.012G039400 [exp] 208 / 3e-66 AT1G17950 267 / 1e-90 myb domain protein 52 (.1) Potri.015G033600 [exp] 206 / 2e-65 AT1G17950 254 / 1e-85 myb domain protein 52 (.1) Potri.007G106100 [exp] 207 / 4e-65 AT4G33450 207 / 2e-66 myb domain protein 69 (.1) Potri.017G017600 [exp] 202 / 1e-63 AT1G17950 243 / 3e-81 myb domain protein 52 (.1) Potri.010G167500 [exp] 206 / 1e-62 AT1G69560 237 / 8e-75 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.008G088000 [exp] 206 / 1e-62 AT1G69560 229 / 2e-71 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.007G134500 [exp] 199 / 2e-62 AT1G17950 246 / 5e-82 myb domain protein 52 (.1) Potri.017G085200 [exp] 198 / 5e-60 AT1G69560 215 / 2e-66 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018936 [exp] 213 / 3e-67 AT1G69560 206 / 6e-65 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10028638 [exp] 213 / 4e-67 AT1G17950 206 / 7e-66 myb domain protein 52 (.1) Lus10026611 [exp] 204 / 2e-62 AT1G69560 238 / 5e-76 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10030452 [exp] 203 / 2e-62 AT1G69560 240 / 6e-77 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10029746 [exp] 201 / 2e-62 AT1G17950 199 / 1e-62 myb domain protein 52 (.1) Lus10005683 [exp] 193 / 4e-59 AT5G17800 212 / 1e-66 myb domain protein 56 (.1) Lus10031900 [exp] 193 / 6e-59 AT1G17950 220 / 2e-70 myb domain protein 52 (.1) Lus10031326 [exp] 192 / 1e-58 AT1G17950 219 / 3e-70 myb domain protein 52 (.1) Lus10040239 [exp] 145 / 4e-40 AT3G55730 315 / 1e-104 myb domain protein 109 (.1) Lus10028250 [exp] 144 / 1e-39 AT3G55730 306 / 2e-101 myb domain protein 109 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13921 [poplar] [flax] Myb_DNA-bind_6 Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G073500.1 pacid=42780029 polypeptide=Potri.002G073500.1.p locus=Potri.002G073500 ID=Potri.002G073500.1.v4.1 annot-version=v4.1 ATGGAGGAATATTCTTTGGCCGGTAATTCAAGTGATGATGCAAAGAGTACTGCTTGCCCTAGAGGTCACTGGAGACCTGCTGAGGATGACAAACTCAGGC AACTGGTTGAACAATATGGTGCACAAAACTGGAATGATATTGCAGAGAAGCTCCAAGGAAGATCAGGGAAGAGTTGCAGATTGAGGTGGTTTAATCAACT TGATCCTAGAATCAACAGGAGACCCTTCAGTGAAGAGGAAGAAGAGAGACTACTAGCAGCTCATCAAGTTCATGGAAACAAGTGGGCATTAATAGCCAGA GTATTTCCAGGTCGAACGGATAATGCTGTGAAAAATCATTGGCATGTAATAATGGCGAGAAAGCAAAGGGAACAATCCAAGCTATGTGGAAAGCGGAGAT ATCAAGATAGTCTAAGTGACTCCAATCCCCCCTCCAGTAGTTCGCATGCAAGGAAATCTAGGACTCAAGAGCTGTTCAGTTCGAGAATTGGATTTGAGGA CTCTAGAGAGTGCGAATTTCGAAACCCCAGTAAAGATAGGACATTCTCAATATCTCCTTCTAGTTCTTCACCTTCTTGGAATTCCCCCCCATCAACTTTA GCAGCTTCAAACAATTGTTCTTTGGTGGATTTATCGAGAAGGAAAGGAAGAGATAATTACTTCAACTCAAGTTTATTATGCACCACCGAGAGCTCCAAAG TCTCCGATCAATCTATTTATAGATACCATATGAATTCTTCAGGGCGTAGCAGCAACTGGAGTTCCAGTAAATTCGGGCTTCCAAACTATAGAAGGGTTGT TCCAAGTCCATTAGGATACCTTAAACTTGGAGATGATTATGGAAACCATGGAATGATCAAGAAAGAGTTGTATTGTCATAATTCATCCACATTAAAGAAT ATGAGAGCGACGAGTAACCATCAAGAGCAACGAGATCATGAATCTATCAGACACAAGGATGTTCCTTTTATAGATTTTCTTGGTGTGGGTATATCTTCTT GA
AA sequence Show only first row Show all	>Potri.002G073500.1 pacid=42780029 polypeptide=Potri.002G073500.1.p locus=Potri.002G073500 ID=Potri.002G073500.1.v4.1 annot-version=v4.1 MEEYSLAGNSSDDAKSTACPRGHWRPAEDDKLRQLVEQYGAQNWNDIAEKLQGRSGKSCRLRWFNQLDPRINRRPFSEEEEERLLAAHQVHGNKWALIAR VFPGRTDNAVKNHWHVIMARKQREQSKLCGKRRYQDSLSDSNPPSSSSHARKSRTQELFSSRIGFEDSRECEFRNPSKDRTFSISPSSSSPSWNSPPSTL AASNNCSLVDLSRRKGRDNYFNSSLLCTTESSKVSDQSIYRYHMNSSGRSSNWSSSKFGLPNYRRVVPSPLGYLKLGDDYGNHGMIKKELYCHNSSTLKN MRATSNHQEQRDHESIRHKDVPFIDFLGVGISS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Potri.002G073500 [exp]	0	1
AT4G22680	MYB	ATMYB85	myb domain protein 85 (.1)		Potri.012G127700 [exp]	2.44	0.8492
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.003G183900 [exp]	2.64	0.8821
AT1G66920			Protein kinase superfamily pro...		Potri.010G118300 [exp]	4.00	0.7865
AT2G32800		AP4.3A	protein kinase family protein ...		Potri.017G055000 [exp]	4.00	0.8566
AT5G13810			Glutaredoxin family protein (....		Potri.003G198100 [exp]	5.29	0.8339
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Potri.002G096800 [exp]	10.81	0.7419
AT5G41800			Transmembrane amino acid trans...		Potri.003G138100 [exp]	12.00	0.8213
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Potri.001G118800 [exp]	12.12	0.8115
AT1G22410			Class-II DAHP synthetase famil...		Potri.002G099200 [exp]	12.44	0.8318
AT1G55550			P-loop containing nucleoside t...		Potri.003G223800 [exp]	13.67	0.8021

Compare expression of checked genes

Potri.002G073500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.