Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77060 214 / 4e-70 Phosphoenolpyruvate carboxylase family protein (.1) AT1G21440 206 / 8e-67 Phosphoenolpyruvate carboxylase family protein (.1) AT2G43180 71 / 6e-15 Phosphoenolpyruvate carboxylase family protein (.1.2.3.4) AT3G21720 39 / 0.0006 ICL isocitrate lyase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G231000 [exp] 75 / 2e-16 AT2G43180 589 / 0.0 Phosphoenolpyruvate carboxylase family protein (.1.2.3.4) Potri.017G036900 [exp] 40 / 0.0003 AT3G21720 924 / 0.0 isocitrate lyase (.1) Potri.007G122900 [exp] 40 / 0.0004 AT3G21720 951 / 0.0 isocitrate lyase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025529 [exp] 75 / 2e-16 AT2G43180 608 / 0.0 Phosphoenolpyruvate carboxylase family protein (.1.2.3.4) Lus10026743 [exp] 74 / 7e-16 AT2G43180 600 / 0.0 Phosphoenolpyruvate carboxylase family protein (.1.2.3.4) Lus10015122 [exp] 40 / 0.0004 AT3G21720 1003 / 0.0 isocitrate lyase (.1) Lus10031552 [exp] 40 / 0.0005 AT3G21720 998 / 0.0 isocitrate lyase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [poplar] [flax] PK_TIM PF13714 [poplar] [flax] PEP_mutase Phosphoenolpyruvate phosphomutase
Representative CDS sequence Show only first row Show all	>Potri.002G073600.3 pacid=42777044 polypeptide=Potri.002G073600.3.p locus=Potri.002G073600 ID=Potri.002G073600.3.v4.1 annot-version=v4.1 ATGCAGAGGAAGACGACGACGACGACGACGACGAGGATACACCATCTGATTGAAGACGAAGACGATACCGGATTCAGTGCCGGTTTTATTTCGGGTTATG CTCTCTCTGCTTCTCTACTCGGCAAACCCGAATTTGGCCTCCTGAGGCCACCGGAAATGGCTGCCACGGCTAGGACGGTTTGTGCGGCTCCGCTCAAACC CATCATTGCTGATGCTGATACTAGTGGTGGCAATGCTCTCAATGTTCAGAGGACTGTCAAAGACTTGATTGCAGCTGGTGCTGCTGGATGCTTTCTAGAG GTTATACCTGCAGAAGAGCATGCTGCCAAAATAGCATCTGCCAGAGATGCTGCTGGGGATTCTGATTTCTTCCTTGTGGCTAGGACTGATGCACGTGCAA CATCAGCAAAAAATGGTCTCTCAGATGCCATTTCAAGGGCTAATCTATAA
AA sequence Show only first row Show all	>Potri.002G073600.3 pacid=42777044 polypeptide=Potri.002G073600.3.p locus=Potri.002G073600 ID=Potri.002G073600.3.v4.1 annot-version=v4.1 MQRKTTTTTTTRIHHLIEDEDDTGFSAGFISGYALSASLLGKPEFGLLRPPEMAATARTVCAAPLKPIIADADTSGGNALNVQRTVKDLIAAGAAGCFLE VIPAEEHAAKIASARDAAGDSDFFLVARTDARATSAKNGLSDAISRANL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77060			Phosphoenolpyruvate carboxylas...		Potri.002G073600 [exp]	0	1
					Potri.006G071801 [exp]	3.74	0.7977
AT5G45480			Protein of unknown function (D...		Potri.006G013400 [exp]	4.24	0.8544
AT5G50690		ATHSD7	hydroxysteroid dehydrogenase 7...		Potri.016G048800 [exp]	8.48	0.8280
					Potri.009G013701 [exp]	9.16	0.8045
AT3G14470			NB-ARC domain-containing disea...		Potri.017G144481 [exp]	10.39	0.7494
AT3G03010			Peptidyl-tRNA hydrolase II (PT...		Potri.013G082850 [exp]	10.67	0.7690
AT4G34090			unknown protein		Potri.001G304401 [exp]	12.96	0.8308
AT4G26020			unknown protein		Potri.018G141232 [exp]	16.52	0.7043
AT3G56380		ARR17	response regulator 17 (.1)		Potri.013G157750 [exp]	18.11	0.6835
AT3G47295			unknown protein		Potri.009G047200 [exp]	28.98	0.7176

Compare expression of checked genes

Potri.002G073600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.