Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31130 127 / 4e-34 unknown protein AT4G19950 122 / 4e-32 unknown protein AT5G44860 114 / 4e-29 unknown protein AT1G26650 45 / 3e-05 unknown protein AT1G69430 45 / 5e-05 unknown protein AT2G18690 43 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G186200 [exp] 355 / 2e-122 AT4G19950 185 / 3e-56 unknown protein Potri.007G105600 [exp] 265 / 6e-87 AT4G19950 179 / 7e-54 unknown protein Potri.007G105700 [exp] 258 / 4e-84 AT4G19950 182 / 4e-55 unknown protein Potri.005G184600 [exp] 210 / 1e-65 AT4G19950 133 / 3e-36 unknown protein Potri.015G125600 [exp] 136 / 2e-37 AT1G31130 327 / 7e-112 unknown protein Potri.012G125800 [exp] 119 / 5e-31 AT5G44860 396 / 4e-139 unknown protein Potri.008G091500 [exp] 56 / 1e-08 AT1G26650 401 / 3e-140 unknown protein Potri.010G163400 [exp] 45 / 6e-05 AT1G26650 453 / 1e-160 unknown protein Potri.006G155900 [exp] 44 / 8e-05 AT1G69430 79 / 2e-16 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018940 [exp] 265 / 1e-86 AT1G31130 231 / 8e-74 unknown protein Lus10028643 [exp] 249 / 1e-80 AT1G31130 228 / 1e-72 unknown protein Lus10018322 [exp] 140 / 2e-38 AT4G19950 417 / 3e-147 unknown protein Lus10017130 [exp] 129 / 3e-34 AT4G19950 410 / 1e-144 unknown protein Lus10038358 [exp] 69 / 2e-14 AT4G19950 183 / 1e-58 unknown protein Lus10036220 [exp] 59 / 6e-10 AT5G44860 265 / 3e-89 unknown protein Lus10037135 [exp] 60 / 8e-10 AT1G69430 431 / 8e-152 unknown protein Lus10036796 [exp] 60 / 1e-09 AT1G69430 434 / 4e-153 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G074200.1 pacid=42779781 polypeptide=Potri.002G074200.1.p locus=Potri.002G074200 ID=Potri.002G074200.1.v4.1 annot-version=v4.1 ATGAAGACAATAGTCATGGAGAGAGAACAAGAAGAGATGCAATTTCTTGGGGTCTTTGGCATATACAAAGAAGCCTACAAGATTATCTTCTCATGGAGAA AGATCTTCAGTCAGATAACTCTTGCCTTGATTCTTCCCCTATCGCTCATCTCCCTAGCTCAAATCGAGGTATCCAATGTCCTCTCTGGAAAGGTTATCAA TAACAAAGCAGAGTTACTAGGGACAGAAGCTGGCACGAAGAGATACAATAAACTATCCCATCATATCTCCTCGGAATTAGCCTATTTTTGGCTCTTCGAA GTTGCATATCTCATCCTTAGTCTTATTTTCTCTCTTCTTTCAACCGCGGCTGTTGTTTACACCATAGCTAGTATCTATACTGACCGAGAAGTGAGTTTCA AGAAGGTTATGAGTGTTGTCCCCAAGGTTTGGAAGAGGCTGATGGTCACCTTTCTGTCTATCTTTGTAGCTTTTTTCGCATACAGTGTAGTTGCTATCCT GGTTTCTTCGTTGGTGTTGATCATTGCAAGTTTTGTTTTTATCGGATTTCCCTATCTCAAAGTCTTCTATTCGCTTGGGATCGTTCTGTTGGTTCTGTAC ATCATGGGGGTTGTGTATATGACCATAGTTTGGCAATTGGCTCGCCCCGTGTCTGTGTTGGAGGAGGCTTGTGGGTTTAAAGCCATGACCAAGAGCAGGG CCCTAATCAAAGGTAAGATGTGGACTGCTATAATTATATTTTTCATGCAGAATTTATCTTCTGGAGTAGTATGCATGGCATTCCAGAATCTAGTTGTTCA TGGGGTGTCGATGAACAAGGCGACAAGAGTATTATATGGGGTAATTTGCTTATCGTTGTTTCTTGGTTTGTTTTTGTTTGGACTTGTTATCCAAACAGTG ATCTATTTTGTTTGCAAATCGAACCACCATGAAAAAATTGAAAAGTCAGCTCTGTCGGATCACCTTGATGTTTATCATGAAGAGAATGTGCCATTGAATT CCAAGGATGTCCAGTTTGAGCAATCTTATGTTTGA
AA sequence Show only first row Show all	>Potri.002G074200.1 pacid=42779781 polypeptide=Potri.002G074200.1.p locus=Potri.002G074200 ID=Potri.002G074200.1.v4.1 annot-version=v4.1 MKTIVMEREQEEMQFLGVFGIYKEAYKIIFSWRKIFSQITLALILPLSLISLAQIEVSNVLSGKVINNKAELLGTEAGTKRYNKLSHHISSELAYFWLFE VAYLILSLIFSLLSTAAVVYTIASIYTDREVSFKKVMSVVPKVWKRLMVTFLSIFVAFFAYSVVAILVSSLVLIIASFVFIGFPYLKVFYSLGIVLLVLY IMGVVYMTIVWQLARPVSVLEEACGFKAMTKSRALIKGKMWTAIIIFFMQNLSSGVVCMAFQNLVVHGVSMNKATRVLYGVICLSLFLGLFLFGLVIQTV IYFVCKSNHHEKIEKSALSDHLDVYHEENVPLNSKDVQFEQSYV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31130			unknown protein		Potri.002G074200 [exp]	0	1
AT4G27740			Yippee family putative zinc-bi...		Potri.012G019200 [exp]	5.29	0.9487
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Potri.005G052800 [exp]	6.00	0.9489	ACCAL.4
AT2G32210			unknown protein		Potri.001G439800 [exp]	6.63	0.9591
AT5G06740			Concanavalin A-like lectin pro...		Potri.006G193000 [exp]	8.36	0.9518
AT2G23570		ATMES19	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G037401 [exp]	14.42	0.9419
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.014G033550 [exp]	15.65	0.9240
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.009G169900 [exp]	15.87	0.9277
AT2G38600			HAD superfamily, subfamily III...		Potri.006G110900 [exp]	18.97	0.9032
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.017G134101 [exp]	19.18	0.9392
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.017G134051 [exp]	19.23	0.9424

Compare expression of checked genes

Potri.002G074200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.