Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77020 593 / 0 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G21080 397 / 2e-137 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT1G76700 397 / 2e-137 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G21510 342 / 2e-116 DNAJ heat shock N-terminal domain-containing protein (.1) AT4G39150 335 / 1e-113 DNAJ heat shock N-terminal domain-containing protein (.1.2) AT5G48030 78 / 1e-15 GFA2 gametophytic factor 2 (.1) AT1G59980 74 / 3e-14 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT1G28210 71 / 2e-13 ATJ1 DNAJ heat shock family protein (.1.2) AT2G42750 69 / 1e-12 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G16650 64 / 2e-12 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G185800 [exp] 701 / 0 AT1G77020 582 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G000300 [exp] 425 / 3e-148 AT1G21080 602 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.005G260400 [exp] 417 / 3e-145 AT1G21080 585 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.009G119800 [exp] 333 / 7e-113 AT4G39150 511 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.004G158300 [exp] 327 / 8e-111 AT4G39150 469 / 2e-167 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.001G271300 [exp] 79 / 1e-15 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.009G065500 [exp] 77 / 3e-15 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.006G056400 [exp] 71 / 2e-13 AT3G12170 370 / 5e-130 Chaperone DnaJ-domain superfamily protein (.1) Potri.016G051800 [exp] 69 / 4e-13 AT3G12170 353 / 2e-123 Chaperone DnaJ-domain superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042774 [exp] 539 / 0 AT1G77020 497 / 1e-176 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10029744 [exp] 493 / 6e-175 AT1G77020 452 / 6e-159 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10013198 [exp] 419 / 8e-146 AT1G21080 580 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Lus10030713 [exp] 410 / 5e-141 AT1G21080 573 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Lus10028809 [exp] 335 / 1e-113 AT4G39150 517 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10017472 [exp] 335 / 1e-113 AT4G39150 519 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10041972 [exp] 327 / 1e-110 AT4G39150 534 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10017980 [exp] 324 / 3e-109 AT4G39150 532 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10035855 [exp] 75 / 2e-14 AT5G48030 524 / 0.0 gametophytic factor 2 (.1) Lus10011934 [exp] 74 / 2e-14 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF14308 [poplar] [flax] DnaJ-X X-domain of DnaJ-containing
Representative CDS sequence Show only first row Show all	>Potri.002G074600.2 pacid=42778082 polypeptide=Potri.002G074600.2.p locus=Potri.002G074600 ID=Potri.002G074600.2.v4.1 annot-version=v4.1 ATGGTGAAGGAAAGTGAGTACTATGATGTTCTTGGTGTCAGCCCATCTGCTTCAGAGGAGGAGATTCGCAAAGCTTATTATCTTAAGGCCAGGCAAGTTC ATCCAGACAAAAATCCAGATGATCCACAGGCCGCAGAGAGATTTCAGGTTTTAGGTGAAGCTTATCAAGTTCTGAGTGATCCAGTGCAAAGAGACGCATA TGATCGAAATGGAAAGTATTGCATATCAAGGGAAACCATGCTTGACCCCACTGCTGTATTCGCTCTTCTGTTTGGGAGTGAACTATTTGAGGACTACGTA GGACATCTGTCTGTGACATCAATGGCTTCTTCTGAATTAGCTAGTGAAAGTGGGAATCCTGATAAAGTACATGAGAAATTGAAGGCTGTCCAAAAAGAAA GAGAAGAAAAGCTAGCAAGATTTCTGAAAGATTTTCTTAACCAATATGCTCAAGGTGACAGAGTTGGATTCTTAAGGCGTGCAGAATCAGAAGCCAAGAG GCTTTCTGATGCAGCTTTTGGAGTGGATATATTACATACTATTGGCTACATATATTCAAGACAAGCGGCACAAGAGCTCGGGAAGAAAGCAATTTATCTT GGGGTGCCATTTTTGGCAGAGTGGGTTCGCAATAAAGGACATTTCTGGAAGTCACAGATTACAGCAGCAAAAGGTGCCTTTCAGTTACTACAGCTTCAAG AAGATATGCGCCGCCAATTTAAAATGGATGGAAGCGGCCCTGGAAATGATGTTGAATCACATTTACTTTCAAACAAAGACACATTGATGAACTCGTTATG GAAACTGAATGTAGTGGACATTGAAATTACCGTGATACATGTGTGCCAAATGGTCCTAAAAGAAAATAATGTTAGAAAAGAAGAGCTTAAAGCCCGTGCT CTGGCATTGAAAAATCTTGGGAGGATCTTTCAGCAGGAAAGGCAATCAAGAAATGGTGCAACATCAAAGGGAAAAAGTTCTGTTGAAACTGATGACGATG ATGATGATAGCAGTAGTGAAGAAGATTCACCAAGGGCATTATCCTATCGAACTCCTCTACTTACTCAGGGTATTGGCAGACTATTCAGATGCCTGTGCAA TCCAGCATTTGATGTGGATGATGAAGAGATCGTGTACAAAAGCAAATGA
AA sequence Show only first row Show all	>Potri.002G074600.2 pacid=42778082 polypeptide=Potri.002G074600.2.p locus=Potri.002G074600 ID=Potri.002G074600.2.v4.1 annot-version=v4.1 MVKESEYYDVLGVSPSASEEEIRKAYYLKARQVHPDKNPDDPQAAERFQVLGEAYQVLSDPVQRDAYDRNGKYCISRETMLDPTAVFALLFGSELFEDYV GHLSVTSMASSELASESGNPDKVHEKLKAVQKEREEKLARFLKDFLNQYAQGDRVGFLRRAESEAKRLSDAAFGVDILHTIGYIYSRQAAQELGKKAIYL GVPFLAEWVRNKGHFWKSQITAAKGAFQLLQLQEDMRRQFKMDGSGPGNDVESHLLSNKDTLMNSLWKLNVVDIEITVIHVCQMVLKENNVRKEELKARA LALKNLGRIFQQERQSRNGATSKGKSSVETDDDDDDSSSEEDSPRALSYRTPLLTQGIGRLFRCLCNPAFDVDDEEIVYKSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77020			DNAJ heat shock N-terminal dom...		Potri.002G074600 [exp]	0	1
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.008G160000 [exp]	2.64	0.9079
AT5G67390			unknown protein		Potri.005G145800 [exp]	2.82	0.8865
AT1G48960			Adenine nucleotide alpha hydro...		Potri.012G059100 [exp]	3.87	0.8677
AT5G12970			Calcium-dependent lipid-bindin...		Potri.003G210801 [exp]	4.89	0.8802
AT3G47800			Galactose mutarotase-like supe...		Potri.004G129700 [exp]	6.48	0.8523
AT4G26540			Leucine-rich repeat receptor-l...		Potri.001G467300 [exp]	6.70	0.8253
AT5G43290	WRKY	ATWRKY49, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.016G099900 [exp]	8.94	0.8359
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Potri.002G178000 [exp]	9.79	0.8576	Pt-KCS1.1
AT5G08350			GRAM domain-containing protein...		Potri.007G075200 [exp]	12.00	0.7950
AT1G03220			Eukaryotic aspartyl protease f...		Potri.008G203200 [exp]	13.49	0.8269

Compare expression of checked genes

Potri.002G074600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.