Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21400 586 / 0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT5G09300 566 / 0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) AT5G34780 302 / 8e-99 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT1G59900 125 / 2e-31 AT-E1 ALPHA, AT-E1ALPHA pyruvate dehydrogenase complex E1 alpha subunit (.1) AT1G24180 119 / 2e-29 IAR4 IAA-CONJUGATE-RESISTANT 4, Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT1G01090 105 / 3e-24 PDH-E1 ALPHA, PDH-E1ALPHA pyruvate dehydrogenase E1 alpha (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G185400 [exp] 752 / 0 AT5G09300 619 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Potri.005G064000 [exp] 560 / 0 AT5G09300 654 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Potri.010G038400 [exp] 117 / 1e-28 AT1G59900 651 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Potri.008G192500 [exp] 116 / 3e-28 AT1G59900 673 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Potri.002G179500 [exp] 101 / 7e-23 AT1G01090 672 / 0.0 pyruvate dehydrogenase E1 alpha (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018945 [exp] 580 / 0 AT1G21400 644 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10028648 [exp] 580 / 0 AT1G21400 645 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10020895 [exp] 542 / 0 AT5G09300 629 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Lus10033480 [exp] 475 / 3e-166 AT5G09300 558 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Lus10000772 [exp] 354 / 4e-120 AT1G21400 417 / 1e-145 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10030820 [exp] 123 / 1e-31 AT1G59900 546 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10013295 [exp] 118 / 5e-29 AT1G59900 687 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10010728 [exp] 115 / 6e-28 AT1G59900 687 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10029216 [exp] 109 / 5e-26 AT1G59900 695 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10002678 [exp] 103 / 1e-23 AT1G01090 688 / 0.0 pyruvate dehydrogenase E1 alpha (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [poplar] [flax] THDP-binding PF13292 [poplar] [flax] DXP_synthase_N 1-deoxy-D-xylulose-5-phosphate synthase
Representative CDS sequence Show only first row Show all	>Potri.002G074900.1 pacid=42778648 polypeptide=Potri.002G074900.1.p locus=Potri.002G074900 ID=Potri.002G074900.1.v4.1 annot-version=v4.1 ATGGCTGTTTGGCTCGCAAAATCAAGAACCATCACCCATCACTTAAAGAGAAAGGTGGGGTTCATGGGGATTTTTCACCAAGATCTTTGGACTTCTTCTT CTTCTTCTTCTTGCATGCAACCAAGCCCTTTATCGTCAATATTTATCCCAGGGTTTCACGAGCATCAGTACTCAAGTACTCCACGTTTGTTTCCTTTCAA CTCATCAATTTCCACCCGTTTCTCCCTTCATCGATTCAAATCCACCAAAGCTGCAAGCCAACTTGAACATCTGTACTCTACTGATGATGATGATCATGAT AATAGTCAGGACCTGGATTTTCCTGGAGGGAAGGTCGCTTGCATATCTGAAATGAGATTCTTACCAGAGTCCGCTGGGAAGAGAATACCCTGTTACCGTG TTCTTGATGACAATGGAGAAATAATCGTGGGCAGCGATTATAAACAGTTATGCGAGGAAATTGCAGTGAAGATGTATACGAACATGGTGTCCCTTCAAAT GATGGATACCATGTTCTACGAGGCTCAGCGCCAAGGAAGAATTTCCTTCTACATGACCTCAACTGGTGAAGAAGCAATAAACATTGCATCAGCAGCTGCA CTAAGTGCAGATGATATCATCTTGCCTCAGTACCGAGAGCCCGGGATTCTATTATGGCGTGGTTTCACAATTGAAGAATTTGCCAGCCAATGCTTTGGAA ACAAGGATGATTGTGGGAAAGGGAGGCAGATGCCCATGCATTATGGGTCTAAGAAGCACAATTTTGTCACTATTTCATCACCTATAGCAACTCAACTTTC TCAAGCAGTAGGCGTTGCTTATTCTCTTAAGATGGACAAAAAGGATGCTTGTGTTGTCACATATACTGGAGATGGTGGTACCAGTGAGGGAGATTTTCAT GCTGCTTTAAACTTTGCAGCAGTGACAGAAGCTCCTGTGGTCTTTATCTGTCGCAACAATGGCTGGGCCATTAGTACTAATATATCAGAGCAATTTCGAA GCGATGGCATTGTTGTCAGGGGTCAAGCTTATGGAATCCGAAGCATACGAGTAGATGGAAATGATGCTCTTGCTGTTTACAGTGCAATTCACACAGCTCG CGAAATGGCCATAAGTGAGCAAAGGCCTGTATTAGTTGAGGCTCTTTCATATAGAGTAGGCCACCACTCCACATCTGATGACTCCACAAAGTATCGGTCA GTTGATGAAATTGAATACTGGAAAATGGTACGGAATCCTGTAAATAGATTCAGAAAATGGGTCGAAAGAAATGGCTGGTGGAGCGAGGAGGAAGAATCAG AGCTCAGAAGCAGCATGAAGAAGCAGCTTCTGCAAGTGATTCAAGTGGCAGAGAAAAAAGAAAAACCTCCACTCAAGGAGTTGTTCTCTGATGTCTATGA TATTACACCACCAAATCTTCGAGAGCAAGAGAAACAACTCAGAGAAACCATCATTAGACATCCTCAGGACTATCCCTCTGATGTTCCATTGTAG
AA sequence Show only first row Show all	>Potri.002G074900.1 pacid=42778648 polypeptide=Potri.002G074900.1.p locus=Potri.002G074900 ID=Potri.002G074900.1.v4.1 annot-version=v4.1 MAVWLAKSRTITHHLKRKVGFMGIFHQDLWTSSSSSSCMQPSPLSSIFIPGFHEHQYSSTPRLFPFNSSISTRFSLHRFKSTKAASQLEHLYSTDDDDHD NSQDLDFPGGKVACISEMRFLPESAGKRIPCYRVLDDNGEIIVGSDYKQLCEEIAVKMYTNMVSLQMMDTMFYEAQRQGRISFYMTSTGEEAINIASAAA LSADDIILPQYREPGILLWRGFTIEEFASQCFGNKDDCGKGRQMPMHYGSKKHNFVTISSPIATQLSQAVGVAYSLKMDKKDACVVTYTGDGGTSEGDFH AALNFAAVTEAPVVFICRNNGWAISTNISEQFRSDGIVVRGQAYGIRSIRVDGNDALAVYSAIHTAREMAISEQRPVLVEALSYRVGHHSTSDDSTKYRS VDEIEYWKMVRNPVNRFRKWVERNGWWSEEEESELRSSMKKQLLQVIQVAEKKEKPPLKELFSDVYDITPPNLREQEKQLRETIIRHPQDYPSDVPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21400			Thiamin diphosphate-binding fo...		Potri.002G074900 [exp]	0	1
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.016G111900 [exp]	1.00	0.9143
					Potri.008G214723 [exp]	12.56	0.8322
AT5G38210			Protein kinase family protein ...		Potri.004G096900 [exp]	21.54	0.6797
					Potri.010G199150 [exp]	25.33	0.8115
					Potri.001G073350 [exp]	31.52	0.8112
AT3G17380			TRAF-like family protein (.1)		Potri.008G199400 [exp]	31.74	0.8095
					Potri.006G216950 [exp]	33.76	0.8078
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Potri.001G396300 [exp]	38.72	0.7975
AT3G30387			Protein of unknown function (D...		Potri.004G110681 [exp]	39.59	0.8057
					Potri.001G338300 [exp]	41.74	0.7962

Compare expression of checked genes

Potri.002G074900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.