Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77010 835 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 408 / 3e-133 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 384 / 5e-123 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 382 / 4e-122 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G68930 364 / 1e-115 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G16860 365 / 4e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 360 / 4e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 354 / 7e-112 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09040 359 / 4e-111 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G25360 351 / 2e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048800 [exp] 419 / 2e-136 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 414 / 6e-135 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.007G085500 [exp] 412 / 7e-134 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G245300 [exp] 402 / 5e-129 AT3G22690 570 / 0.0 unknown protein Potri.004G059400 [exp] 402 / 6e-129 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G018800 [exp] 385 / 2e-122 AT2G13600 463 / 3e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G019900 [exp] 377 / 7e-121 AT4G02750 542 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G104700 [exp] 372 / 4e-119 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G021300 [exp] 372 / 4e-119 AT1G20230 852 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010146 [exp] 877 / 0 AT1G77010 682 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 386 / 2e-123 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10024199 [exp] 387 / 5e-122 AT3G09040 1017 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013540 [exp] 382 / 5e-122 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 378 / 5e-122 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030581 [exp] 385 / 4e-119 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10015898 [exp] 371 / 2e-118 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030908 [exp] 378 / 2e-116 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10009913 [exp] 372 / 7e-116 AT3G09040 1114 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015225 [exp] 368 / 1e-115 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.002G075200.1 pacid=42777241 polypeptide=Potri.002G075200.1.p locus=Potri.002G075200 ID=Potri.002G075200.1.v4.1 annot-version=v4.1 ATGGATCTAGATCTCCAAAATTTGGCTCGCTTTCTCCAATCTCTTAACACTCCTCATTCAATACACCAAGGAAAGCAGCTCCATATTCTCTTCTTCAAAA AGGGTCTCATACAATCTACTCTTTCACTAGCAAACCGCCTTCTACAAATGTACACTAGATGTGGCAGCATGACCAATGCACACAAACTGTTCGACGAAAT GCCTCACAGAAACTGTTTTTCATGGAATACCATGATAGAGGGCTACATGAAGTCCGGGAATAAAGAAAGATCAATTCGCTTGTTTGATATGATGTCAAAT AAGAATGATTATTCATGGAACGTGGTCTTTTCAGGGTTTGCAAAAGCTGGTGAAATGGAAATTGCTCGGAGGTTATTTAACGAGATGCCTAACAGAAACG GGGTTGTATGGAATTCGATGATCCACAGTTATGCTCGAAATGGGTCACCAAGAGAAGCTGTTAGGCTATTCAAGGAATTGAATTTGGACCCTTTGGATAA ATCATGTTGTGATACGTTTGTGTTGGCTACAGTTATTGGGGCCTGCACTGATTTGGGTGAAATTCAATGTGGCAAGCAAATACATGCCCGGATTTTGATT GATAATATGGAACTTGATTCGGTGTTAACTAGCTCGTTAATTAATTTGTATGGAAAGTGTGGTGATTTGGATAGTGCACATTGTGTTTTGAATACGATGG AGGAGCCAGATGACTTTTCCTTATCAGCATTGATCACAGGTTATGCGAATCATGGTAGAATGAATGATGCTCGAAGAGCATTTTATAGGAAAAGTAATTC GTGTGTTGTGGTATGGAATTCAATGATTTCAGGATATGTTACCAATAATGAGGAAATTGAAGCATTTTTACTCTTCAATGACATGCAGAAAAAGGGACTC AAAGTAGACTTCTCTACACTTGCAACCATTTTGAGTGCCTGCAGCAGCTTATGCAATTCTCAACATGGCAAACAAATGCATGCTTATGCTTGTAAAGTTG GATTGATTTGTGACAATGTTGTTGCTAGTGCTTTCATTGACGCATACTCCAAGTGTGGAAGCCTGAATGATGCTTGTAAATTATTTAGTGAGCTCAAAAC CTATGACACGATTTTGCTCAACTCCATGATCACAGTGTATAGCAATTCTGGTAAAATTGAAGATGCTAAACAGATCTTCAATACAATGCCTAGTAAAAGC TTGATATCCTGGAATTCAATGATAGTGGGTCTTAGTCAAAACGGTTGTCCAGTTGACGCATTGGATCTTTTTTGCATGATGAATAAACTGGATTTGAGGA TGAACAGGTTTAACCTTACTAGTGTCATCAGTGCTTGTGCTAGTATCTCTTCACTTGAACTTGGTGAACAGATTTTTGCTAGAGCAACAGTTGTTGGCCT TGATTCTGATGAGGTCATCTCTACTTCCCTAGTTGATTTTTATTGCAAGTGTGGATTTATTGAAATAGGAAGAAAACTATTTGACACAATGATGAAATCT GATGAGATTTCATGGAATTCAATGCTGATGGGGTATGCTACAAATGGTCATGGATTGGAAGCGCTAACATTGTTTAATGAAATGAGGCATGCTGGTGTCA GGCCAACTGAAATTACATTTACAGGGGTTCTATCTGCCTGTGATCATTGTGGATTGGTTGAAGAGGGATGGAGATGGTTTAATATAATGCAATATGACTA CCATATTGATCCAGGGATTGAGCACTATTCTTGCATGGTCGATCTTTTTGCTCGTGCTGGTTACTTGGAAGAAGCAATGAATTTAATAAAACGTATGCCT TTTGAGGCAGATGCTAGCATGTGGTCATCAGTTCTGAGAGGTTGTATGGCTCATGGAGAAAAGGATCTTGGAGAAAAGGTGGCACAGCAGATCATTGAGC TCGATCCTGAGAACTCTGGTGCTTATGTGCAGCTATCTAGCATATTTGCCACTTCTGGAGACTGGGAAAGCTCAGCACTGGTTAGAAAGGTAATGCAGGA GAGGCAAGTACAAAAATATCCTGGTTACAGTTGGGCTAATTGTTGA
AA sequence Show only first row Show all	>Potri.002G075200.1 pacid=42777241 polypeptide=Potri.002G075200.1.p locus=Potri.002G075200 ID=Potri.002G075200.1.v4.1 annot-version=v4.1 MDLDLQNLARFLQSLNTPHSIHQGKQLHILFFKKGLIQSTLSLANRLLQMYTRCGSMTNAHKLFDEMPHRNCFSWNTMIEGYMKSGNKERSIRLFDMMSN KNDYSWNVVFSGFAKAGEMEIARRLFNEMPNRNGVVWNSMIHSYARNGSPREAVRLFKELNLDPLDKSCCDTFVLATVIGACTDLGEIQCGKQIHARILI DNMELDSVLTSSLINLYGKCGDLDSAHCVLNTMEEPDDFSLSALITGYANHGRMNDARRAFYRKSNSCVVVWNSMISGYVTNNEEIEAFLLFNDMQKKGL KVDFSTLATILSACSSLCNSQHGKQMHAYACKVGLICDNVVASAFIDAYSKCGSLNDACKLFSELKTYDTILLNSMITVYSNSGKIEDAKQIFNTMPSKS LISWNSMIVGLSQNGCPVDALDLFCMMNKLDLRMNRFNLTSVISACASISSLELGEQIFARATVVGLDSDEVISTSLVDFYCKCGFIEIGRKLFDTMMKS DEISWNSMLMGYATNGHGLEALTLFNEMRHAGVRPTEITFTGVLSACDHCGLVEEGWRWFNIMQYDYHIDPGIEHYSCMVDLFARAGYLEEAMNLIKRMP FEADASMWSSVLRGCMAHGEKDLGEKVAQQIIELDPENSGAYVQLSSIFATSGDWESSALVRKVMQERQVQKYPGYSWANC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77010			Pentatricopeptide repeat (PPR)...		Potri.002G075200 [exp]	0	1
AT4G38440		IYO	MINIYO, unknown protein		Potri.009G139900 [exp]	3.74	0.8860
AT3G47840			Tetratricopeptide repeat (TPR)...		Potri.007G021700 [exp]	7.74	0.8694
AT1G68930			pentatricopeptide (PPR) repeat...		Potri.010G136200 [exp]	10.39	0.8650
AT1G53200			unknown protein		Potri.012G106300 [exp]	12.04	0.7402
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Potri.017G056700 [exp]	15.23	0.8404
AT2G02150		EMB2794	EMBRYO DEFECTIVE 2794, Tetratr...		Potri.010G098400 [exp]	16.58	0.8130
AT1G64310			Tetratricopeptide repeat (TPR)...		Potri.015G082283 [exp]	17.49	0.8374
AT3G18840			Tetratricopeptide repeat (TPR)...		Potri.009G113500 [exp]	18.00	0.8543
AT2G26790			Pentatricopeptide repeat (PPR)...		Potri.010G243002 [exp]	18.49	0.8233
AT5G52630		MEF1	mitochondrial RNAediting facto...		Potri.016G053500 [exp]	19.49	0.8358

Compare expression of checked genes

Potri.002G075200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.