Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26540 815 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G35130 327 / 1e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 325 / 1e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 322 / 2e-98 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53360 319 / 5e-98 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 317 / 2e-97 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 314 / 9e-97 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 313 / 1e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09040 315 / 2e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 309 / 7e-94 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G067500 [exp] 356 / 1e-109 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G067000 [exp] 346 / 7e-108 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 347 / 1e-107 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G018800 [exp] 346 / 1e-107 AT2G13600 463 / 3e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G006800 [exp] 343 / 8e-107 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.005G187800 [exp] 347 / 2e-106 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 337 / 4e-105 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G215500 [exp] 341 / 1e-104 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G245300 [exp] 338 / 2e-104 AT3G22690 570 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015584 [exp] 817 / 0 AT3G26540 745 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032922 [exp] 572 / 0 AT3G26540 509 / 1e-173 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032091 [exp] 339 / 2e-105 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 338 / 2e-105 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017082 [exp] 341 / 1e-104 AT1G16480 507 / 3e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10014594 [exp] 336 / 2e-104 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022368 [exp] 335 / 1e-101 AT2G13600 414 / 2e-129 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 333 / 8e-101 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009913 [exp] 328 / 3e-99 AT3G09040 1114 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018897 [exp] 332 / 2e-98 AT5G16860 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.002G075300.2 pacid=42777451 polypeptide=Potri.002G075300.2.p locus=Potri.002G075300 ID=Potri.002G075300.2.v4.1 annot-version=v4.1 ATGAGTGGCGCTTCTATTCTCAGCTCTCTTCTCTCCAACAAAACCCTCAACCTCCAAACCCGACCTGCAAATGTCAAAGCCTTAACCAAACAAATCCTCT CTCACCTCGAAGCCAATCGCCTTAAACAAGCCGTTTCTATTCTCTTTGCATCTCCTGATTGCTTCGCTTATTCCCTTTATGCCCATCTCTTCCAGGTTTG CTCTTCCAGTCTTGCTATCGTCGAGGCTCGAAAGGTTGAATCGCAGTTACTTGGTGCCTGTCCAACGCCTCCAACCTTCCTCTTAAATAGAGCCATAGAT ACTTATGGAAAATGCCGGTGTTTGGAGGATGCAAAGGAATTGTTTGATGAGATGCCTCAGAGAGATGGCGGATCTTGGAATGCGATGATTAGGGCTTGCT TGCAATGTGTGCGCCCGGAAAAAGCGTTGAGTTATTTTGGAGATATGCATAAACAAGGGGTTTATGCAAATGAGGTTACCTTTTCTAGTGCTTTGAGAGC ATGCGGTGATGTTCTGGAACTTTGTCTTTCGAGGCAAATTCATGGGCTTATTGTGAAATATGGGTTTTGTGGGAATGTCATTGTTGGGAGTTCGCTTGTT GATGTGTATGGTAAGTGTGGAGCTATGAGTGAATCAAGGAGGATTTTTGATGAGATTGAGAATCCTAATAATGTTACTTGGAACATTATTGTTAGGCGGT ATCTTGAGGTAGGTGATGAGAATGAGGCAGTGGTCATGTTTTTTAAGATGTTTCGTGCCAAACTTAGACCATTGAGTTATACCTTCTCTAATGCCCTTGT TGCATGTTCAGATATGCGCGCAGTCAAGGAGGGAATGCAGATCCATGGAGTTGCAACTAAGATTAACTTTGAGGAGGAAGAGGTAGTTTTGAGCTCACTT ATTGATATGTACGTAAAGTGTGGTGAAATAGAAAGTGCTCGTAGGGTTTTTGACCTGCCTGGTTCGAGAGATTTAATCTCTTGGACTTCTATGGTGTCAG CTTATGCAATGAGTGGCAGAATGAGAGAGGCAAGGGAGCTTTTCGATGAGATGCCTGAACGGAACATGGTCTCATATAATGCATTACTGGCAGGGTACAT CCGTTCCCTCCAATGGGAAGAGGCCTTAGATTTTGTTTATCTGATGTGCAGGACAACTGAAAACATTGATCACATCACTTTTCAATTGATGCTTAATGTA TGTTCTGGCCTATCAGATGTTGACATGGGGAAGCAGGTACACGGCTTCATTTATCGTCATGGTTGGTTATCCAACACTGTTATTGGAAATGCCCTTCTTG ACATGTACTGCAAATGTGGAAACTTGAGAAGTGCTGGAGTTTGGTTTCATCAAATGAAACAGTCACGAGATAGCGTTTCTTGGAATGTTTTGTTGACCAG CTATGCTCGTCGTCAAATGAGTGAACAAGCTATGTCGATTTTCCGGGAGATGCAATGGGAGACAAAACCGCATAAATTTATATTTGCTACTCTTTTGGCA GCTTGTGCAAATACTTTTGCACTTGACCAGGGGAAACAAATTCATGGGTTCATGATCAGAAATGGTTATGACATAGACACTGTGATCGCAGGAGCGTTGC TTGACATGTACTCTAAATGCCGGTGCCTTGAATATGCTCTCATTGTTTTTAGAGAAGCTGATAAACGGGACTTGGTTCTTTGGAACTCCATGATTTTGGG TTGTTGTCACCTCGGAAGGGGTAAATTGGCACTTCGATTATTTGGATTTATGGAGGAGGAAGGAACCAAGCCAGATAATGTCACCTTTCAAGGTATCTTG CTTGCTTGTGTATACGAGGGTCATGTTGATTTGGCTAGGCAGTATTTTAATTCAATGAGCAGTAAATACTGTATCATACCAAGGCTGGAGCACTATGAGT GTATTATTGAACTCTTAAGTCGGTATGGGTGCATGAAGGAGCTTGAGAATTTTATTAAGGATATGCCTTTTGATCCCACTGCTCCGATGTTGACAAGAGT AGTGGATGCATGTAAAGAGCATCAGTGTTGGAGATTGGGAGAATGGGCTGCTAAACGACTCGATGAATTGAGTCCTTCAGTTCCTTTGCCCTTTGAAATT GCGGACAGAACCAAATTCAGCCTGTTGTGA
AA sequence Show only first row Show all	>Potri.002G075300.2 pacid=42777451 polypeptide=Potri.002G075300.2.p locus=Potri.002G075300 ID=Potri.002G075300.2.v4.1 annot-version=v4.1 MSGASILSSLLSNKTLNLQTRPANVKALTKQILSHLEANRLKQAVSILFASPDCFAYSLYAHLFQVCSSSLAIVEARKVESQLLGACPTPPTFLLNRAID TYGKCRCLEDAKELFDEMPQRDGGSWNAMIRACLQCVRPEKALSYFGDMHKQGVYANEVTFSSALRACGDVLELCLSRQIHGLIVKYGFCGNVIVGSSLV DVYGKCGAMSESRRIFDEIENPNNVTWNIIVRRYLEVGDENEAVVMFFKMFRAKLRPLSYTFSNALVACSDMRAVKEGMQIHGVATKINFEEEEVVLSSL IDMYVKCGEIESARRVFDLPGSRDLISWTSMVSAYAMSGRMREARELFDEMPERNMVSYNALLAGYIRSLQWEEALDFVYLMCRTTENIDHITFQLMLNV CSGLSDVDMGKQVHGFIYRHGWLSNTVIGNALLDMYCKCGNLRSAGVWFHQMKQSRDSVSWNVLLTSYARRQMSEQAMSIFREMQWETKPHKFIFATLLA ACANTFALDQGKQIHGFMIRNGYDIDTVIAGALLDMYSKCRCLEYALIVFREADKRDLVLWNSMILGCCHLGRGKLALRLFGFMEEEGTKPDNVTFQGIL LACVYEGHVDLARQYFNSMSSKYCIIPRLEHYECIIELLSRYGCMKELENFIKDMPFDPTAPMLTRVVDACKEHQCWRLGEWAAKRLDELSPSVPLPFEI ADRTKFSLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26540			Tetratricopeptide repeat (TPR)...		Potri.002G075300 [exp]	0	1
AT1G68930			pentatricopeptide (PPR) repeat...		Potri.010G136200 [exp]	3.46	0.9009
AT5G61800			Pentatricopeptide repeat (PPR)...		Potri.012G110800 [exp]	3.74	0.8983
AT1G71420			Tetratricopeptide repeat (TPR)...		Potri.013G098800 [exp]	5.47	0.8879
AT5G39680		EMB2744	EMBRYO DEFECTIVE 2744, Pentatr...		Potri.017G084900 [exp]	5.47	0.8907
AT5G52630		MEF1	mitochondrial RNAediting facto...		Potri.016G053500 [exp]	5.65	0.8904
AT3G23330			Tetratricopeptide repeat (TPR)...		Potri.001G186500 [exp]	8.12	0.8827
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Potri.015G003000 [exp]	9.38	0.8781
AT5G15340			Pentatricopeptide repeat (PPR)...		Potri.017G087600 [exp]	10.95	0.8046
AT4G38440		IYO	MINIYO, unknown protein		Potri.009G139900 [exp]	11.53	0.8806
AT1G11900			Tetratricopeptide repeat (TPR)...		Potri.001G273100 [exp]	11.95	0.8717

Compare expression of checked genes

Potri.002G075300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.