Plant FIBer expression Database

Potri.002G075400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G76980 141 / 2e-40 unknown protein
AT1G21390 131 / 1e-36 EMB2170 embryo defective 2170 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G185200
[exp]
323 / 9e-111 AT1G76980 134 / 1e-37 unknown protein
Potri.007G104500
[exp]
77 / 4e-16 AT1G76980 70 / 6e-14 unknown protein
Potri.005G064700
[exp]
69 / 2e-13 AT1G76980 70 / 7e-14 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000771
[exp]
60 / 3e-10 AT1G21390 66 / 1e-12 embryo defective 2170 (.1)
Lus10018947
[exp]
58 / 2e-09 AT1G21390 64 / 8e-12 embryo defective 2170 (.1)
Lus10004311
[exp]
49 / 2e-06 AT1G21390 47 / 3e-06 embryo defective 2170 (.1)
Lus10019210
[exp]
47 / 9e-06 AT1G21390 46 / 7e-06 embryo defective 2170 (.1)
PFAM info
Representative CDS sequence
>Potri.002G075400.4 pacid=42779931 polypeptide=Potri.002G075400.4.p locus=Potri.002G075400 ID=Potri.002G075400.4.v4.1 annot-version=v4.1
ATGCTAGACCCTGGCACAAAATTCCCAGATAACCTGCAAGTCCATTCAAGGGACAGTTTTAATTATCACGGTGTCCTGAGTTATGGTGTTCTGACGAGAA
AAACAGCGGAGACATATTACAATCACCATGGTTGGAATGATATGGGGATGCTTGGAGCTCAAAGAAGGGATGTACAGGGTGAGGACTCTGGGGTTTGTTC
ACCTCCCTTGTGGAGGACAAGTCCACCTAGAAGCCCCCAGCATCGCAGAAATCATTACCGGAGTCTTTCTCCGTCATCAAGAGCTCAAGCTATTGCTAGG
GGCCAAAAGGAGCTCACGGAGATGGTAAGTAGAATGCCTGAGGGATGTTATGAGCTATCTTTAAGAGATCTTGTGGAGCAGCCAATGGTTGTCGATGATG
TTAAAAAAGAAAGTCTTAGTGAAGATATGTTAAGAAGGGGGAAAGAGAAGAAGAAAAAGATTGAAAAGAAAGTGCAAATGAATAGAAGTGGAAGCATAAA
CAATGAAGGGTTTCTTCTGAAGATGGTGTTTCCATTTTCTTTTGGTTCAAGAAAGAAGAAAAAAAATATCAATAGTCCTCAGACCATCAATAACAGTTCA
AAGGATGGAAAGGTTTCTCCAAGGCCTTTTCTATTTGATAATGGATCTGAAAAAACTGTCGATGAAGAGTGGTGGAAGAATAAATTCCGGCAATCTAAGG
ACAGTGAGAATGGTGCTGGATTGACCACCAGTAATAGTGGAAGCTCAAAAAGCAGCGGCAGCAGCAGCAGCAGCAGCAGAAGACAGCAGCAGGAACGGAA
GAGGTGGTTGCTGGCCTTTCATTTTCTCCAAGAAAGGCAAAGCAGCAGGATGAATGATATAATCTTGCATGGATCAGAATGTGTTTACATGAAATGCTTT
TGGCGTCCCTTTTACTTCTGA
AA sequence
>Potri.002G075400.4 pacid=42779931 polypeptide=Potri.002G075400.4.p locus=Potri.002G075400 ID=Potri.002G075400.4.v4.1 annot-version=v4.1
MLDPGTKFPDNLQVHSRDSFNYHGVLSYGVLTRKTAETYYNHHGWNDMGMLGAQRRDVQGEDSGVCSPPLWRTSPPRSPQHRRNHYRSLSPSSRAQAIAR
GQKELTEMVSRMPEGCYELSLRDLVEQPMVVDDVKKESLSEDMLRRGKEKKKKIEKKVQMNRSGSINNEGFLLKMVFPFSFGSRKKKKNINSPQTINNSS
KDGKVSPRPFLFDNGSEKTVDEEWWKNKFRQSKDSENGAGLTTSNSGSSKSSGSSSSSSRRQQQERKRWLLAFHFLQERQSSRMNDIILHGSECVYMKCF
WRPFYF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G76980 unknown protein Potri.002G075400
[exp]
0 1
AT1G23260 MMZ1 ,UEV1A UBIQUITIN E2 VARIANT 1A, MMS Z... Potri.010G107700
[exp]
3.16 0.6888
AT4G32860 unknown protein Potri.006G236700
[exp]
6.32 0.6478
AT1G06330 Heavy metal transport/detoxifi... Potri.002G005300
[exp]
6.32 0.7434
AT1G18470 Transmembrane Fragile-X-F-asso... Potri.015G050300
[exp]
15.29 0.6470
AT4G15920 SWEET17, AtSWEE... Nodulin MtN3 family protein (.... Potri.013G013900
[exp]
17.32 0.6312
AT5G23570 SGS3, ATSGS3 SUPPRESSOR OF GENE SILENCING 3... Potri.003G187900
[exp]
19.13 0.6817
AT4G14660 NRPE7 RNA polymerase Rpb7-like, N-te... Potri.008G161700
[exp]
20.97 0.5765
AT4G02340 alpha/beta-Hydrolases superfam... Potri.013G134800
[exp]
27.22 0.6266
AT2G01490 phytanoyl-CoA dioxygenase (Phy... Potri.006G222800
[exp]
27.65 0.6156
AT3G16360 AHP4 HPT phosphotransmitter 4 (.1.2... Potri.018G046800
[exp]
31.63 0.6515

Potri.002G075400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.