Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21380 471 / 1e-162 Target of Myb protein 1 (.1) AT1G76970 444 / 7e-153 Target of Myb protein 1 (.1) AT4G32760 331 / 5e-106 ENTH/VHS/GAT family protein (.1.2) AT3G08790 295 / 1e-92 ENTH/VHS/GAT family protein (.1) AT5G63640 199 / 3e-58 ENTH/VHS/GAT family protein (.1) AT5G01760 201 / 6e-58 ENTH/VHS/GAT family protein (.1) AT2G38410 198 / 6e-56 ENTH/VHS/GAT family protein (.1) AT5G16880 133 / 5e-34 Target of Myb protein 1 (.1.2.3) AT1G06210 97 / 8e-22 ENTH/VHS/GAT family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G184900 [exp] 721 / 0 AT1G21380 473 / 2e-163 Target of Myb protein 1 (.1) Potri.018G039100 [exp] 348 / 2e-112 AT4G32760 561 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.006G241000 [exp] 346 / 8e-112 AT4G32760 630 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.016G131900 [exp] 273 / 1e-83 AT2G38410 406 / 2e-132 ENTH/VHS/GAT family protein (.1) Potri.006G106500 [exp] 265 / 1e-80 AT2G38410 407 / 2e-133 ENTH/VHS/GAT family protein (.1) Potri.T010700 [exp] 194 / 1e-56 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.T005401 [exp] 194 / 1e-56 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.004G138600 [exp] 185 / 5e-53 AT5G63640 447 / 1e-155 ENTH/VHS/GAT family protein (.1) Potri.013G082500 [exp] 139 / 2e-36 AT5G16880 553 / 0.0 Target of Myb protein 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029739 [exp] 560 / 0 AT1G21380 518 / 0.0 Target of Myb protein 1 (.1) Lus10042770 [exp] 539 / 0 AT1G21380 514 / 4e-180 Target of Myb protein 1 (.1) Lus10028649 [exp] 457 / 1e-153 AT1G21380 452 / 7e-152 Target of Myb protein 1 (.1) Lus10018948 [exp] 440 / 1e-151 AT1G21380 439 / 1e-151 Target of Myb protein 1 (.1) Lus10022140 [exp] 337 / 8e-108 AT4G32760 637 / 0.0 ENTH/VHS/GAT family protein (.1.2) Lus10014155 [exp] 266 / 3e-81 AT5G01760 439 / 5e-146 ENTH/VHS/GAT family protein (.1) Lus10022753 [exp] 264 / 2e-80 AT5G01760 434 / 3e-144 ENTH/VHS/GAT family protein (.1) Lus10025264 [exp] 261 / 4e-79 AT2G38410 406 / 1e-132 ENTH/VHS/GAT family protein (.1) Lus10011689 [exp] 206 / 7e-59 AT3G08790 461 / 5e-154 ENTH/VHS/GAT family protein (.1) Lus10022667 [exp] 199 / 7e-58 AT5G63640 450 / 1e-156 ENTH/VHS/GAT family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [poplar] [flax] ENTH_VHS PF00790 [poplar] [flax] VHS VHS domain CL0009 [poplar] [flax] PF03127 [poplar] [flax] GAT GAT domain
Representative CDS sequence Show only first row Show all	>Potri.002G075500.1 pacid=42778494 polypeptide=Potri.002G075500.1.p locus=Potri.002G075500 ID=Potri.002G075500.1.v4.1 annot-version=v4.1 ATGGCTAATACTGCTGCGGCTTGTGCGGAGAGGGCTACCAATGATATGTTGATTGGTCCTGACTGGGCTGTAAACATTGAGCTATGTGATATCATCAACA TGGATCCTGGGCAAGCAAAGGATGCCTTGAAAATACTCAAGAAGCGACTGGGCAGCAAAAATCCTAAAATCCAACTCCTAGCTCTTTTTGCATTGGAGAC ACTAAGCAAAAATTGTGGTGACAGTGTGTTTCAGCAAATCATTGAACGTGATATCTTACATGATATGGTTAAAATAGTAAAAAAGAAGCCTGATTTAAAT GTGCGAGAAAAGATACTTCTTCTGATAGATGCATGGCAAGAAGCTTTCGAGGGACCAAGAGGAAGGTATCCTCAATATCATGCTGCATATAATGAACTAA GGTCTGCAGGGGTTGAATTTCCACCTCGAGCAGAGAACAGTGTACCATTCTTTACTCCTCCCCAAACACAGCCTATAGCTGATGTACCTTCAGCATATGA AGATGCTGCTATTCAAGCCTCTCTGCAGTCTGATGCTTCTGGCCTCAGCTTGCATGAGATTCAAAACGCTCGTGGACTAGCAGATGTGTTAATGGAAATG CTTAGTGCCATGGATCCCAAAAACCCTGAGGGTGTAAAGCAAGAAGTGGTTGTCGACCTTGTTGACCAGTGCCGTTCTTACCAAAAGCGTGTCATGCTTC TTGTTAACAATACAACAGACGAGGGGCTTCTATTTCAGGGACTAGCACTGAATGATGACCTGCAGCGGGTACTCCGTCAGCATGATGATTTTGCGAAAGG AATCCCTGGTGTGGGAGAAAGGGAAATGGAAACTCCAGTTGTGCCTCTTGCTAATATTAACCATGAGGATGATGAGTCGGAAGATGATTTTACGCAGCTG GCGCACAGGTCATCAAGAGATAATTCACAAGGACTGGGCCAGAAACCAGTCAGTGTTAGGACTCAACCAGGACCAGTCAGCCCATTTCTTCCTCCTCCTC CCTTGTCAAAGAATCCAGTCAACAAGGAGACGGGCATGATTGATTATCTCAGTGGTGATGTCTACAAGTCTGAAGGATCCCCTCAAATATCAGAACCTAC ACCCTTTAAAGTCCCAATGCATTCCAACGTAAGCTCATCGCCACCATATTCTCCAACGGTATCGGCCTCATCTCCTCCCTCCAGTGCTGTGAACTCTTCT CCTGTGCTAACTGGACATCCTGTGTTTGACGAACCAGCTCCATTAAGCCAATCTGGTGAACGGCTGCCCCCAGCTCCTTGGGATGCACAGCCCGCTGGAT CTCTTCCACCACCGCCTTCCAGGTATAATCAAAGACAGCAGTTCTTTGAGCATAATATCGGTGTTGTAGGTGGTGCTTCTCATTCAAGCAGCGGATCTGG TTCTTCTTATGACAGCTTAGCTGTTCAAACCCAAAATCTCTCTCTTAATTCGTCTACCCCTCCAAAACAAGCAAAACCAGAAGATGCACTCTTCAAAGAC CTGGTTGATTTTGCAAAATCCAAGTCATCTTCATCGTCCAAACCCAACAACAGGTCATTTTGA
AA sequence Show only first row Show all	>Potri.002G075500.1 pacid=42778494 polypeptide=Potri.002G075500.1.p locus=Potri.002G075500 ID=Potri.002G075500.1.v4.1 annot-version=v4.1 MANTAAACAERATNDMLIGPDWAVNIELCDIINMDPGQAKDALKILKKRLGSKNPKIQLLALFALETLSKNCGDSVFQQIIERDILHDMVKIVKKKPDLN VREKILLLIDAWQEAFEGPRGRYPQYHAAYNELRSAGVEFPPRAENSVPFFTPPQTQPIADVPSAYEDAAIQASLQSDASGLSLHEIQNARGLADVLMEM LSAMDPKNPEGVKQEVVVDLVDQCRSYQKRVMLLVNNTTDEGLLFQGLALNDDLQRVLRQHDDFAKGIPGVGEREMETPVVPLANINHEDDESEDDFTQL AHRSSRDNSQGLGQKPVSVRTQPGPVSPFLPPPPLSKNPVNKETGMIDYLSGDVYKSEGSPQISEPTPFKVPMHSNVSSSPPYSPTVSASSPPSSAVNSS PVLTGHPVFDEPAPLSQSGERLPPAPWDAQPAGSLPPPPSRYNQRQQFFEHNIGVVGGASHSSSGSGSSYDSLAVQTQNLSLNSSTPPKQAKPEDALFKD LVDFAKSKSSSSSKPNNRSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21380			Target of Myb protein 1 (.1)		Potri.002G075500 [exp]	0	1
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Potri.001G353700 [exp]	3.74	0.9008
AT4G11860			Protein of unknown function (D...		Potri.001G112300 [exp]	3.87	0.8420
AT5G15730		CRLK2, AtCRLK2	calcium/calmodulin-regulated r...		Potri.004G113400 [exp]	4.00	0.8667
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Potri.017G059600 [exp]	8.48	0.8454	Pt-HSFA5.2
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093966 [exp]	9.38	0.8538
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.012G055500 [exp]	9.89	0.8446
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.006G257900 [exp]	12.96	0.8580
AT2G45910			U-box domain-containing protei...		Potri.009G030400 [exp]	14.49	0.8069
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Potri.001G015900 [exp]	15.96	0.8591	Pt-EIL3.2
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Potri.014G043900 [exp]	16.18	0.7817	Pt-ATPUP11.1

Compare expression of checked genes

Potri.002G075500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.