Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29470 1049 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G34300 1048 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G64030 1028 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G51070 895 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G40280 610 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G56080 587 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G19430 558 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 502 / 4e-168 Putative methyltransferase family protein (.1) AT2G39750 497 / 7e-166 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G77260 494 / 2e-165 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G184500 [exp] 1419 / 0 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G065200 [exp] 1062 / 0 AT5G64030 1078 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G104000 [exp] 1057 / 0 AT5G64030 1022 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G118100 [exp] 900 / 0 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G017400 [exp] 871 / 0 AT3G51070 960 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G185000 [exp] 628 / 0 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G260600 [exp] 573 / 0 AT1G19430 953 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 497 / 2e-166 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G059500 [exp] 493 / 1e-164 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042767 [exp] 1138 / 0 AT1G29470 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10029736 [exp] 1115 / 0 AT1G29470 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10018954 [exp] 1106 / 0 AT1G29470 1047 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10028650 [exp] 1092 / 0 AT1G29470 1036 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10020894 [exp] 945 / 0 AT5G64030 1019 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10019644 [exp] 890 / 0 AT5G64030 922 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028354 [exp] 850 / 0 AT3G51070 1051 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033481 [exp] 837 / 0 AT5G64030 924 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041804 [exp] 835 / 0 AT3G51070 1034 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10014274 [exp] 822 / 0 AT3G51070 1041 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03141 [poplar] [flax] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.002G075800.2 pacid=42777573 polypeptide=Potri.002G075800.2.p locus=Potri.002G075800 ID=Potri.002G075800.2.v4.1 annot-version=v4.1 ATGCCTATGGGAAAATATTCCCGTGTTGATGGGAGGAAGTCATCCAACTACTGTTCTACAACCACTGTGGTTGTGTTTGTTGCTTTGTGTTTAGTTGGGG CTTGGATGTTTATCTCATCATCTGTTCCAGTTCAAAACTCAGACCCATCATCCCAAGAGAATGTGAAACGAGTGGCTGGTGAAAATATTTCTAAGCATTT TGAAGACATTCCTGGTGATTTACCGGAGGATGCAACAAAAGAAGATGGCAATGCTGTTGATTCTCAAAGTGCTAGCCAATCTGATGTCCATGATGACCCA AAGGTGACTGAAAAAGAGAGTGAAAGTACTGTTGAGGATAACAAAGATGAGAACAGGGATGAGAAGGCCGAGTCTAAGAATGTGGTAGAAGAAAACCAGG ATGGGAAGACTGTTTCTGAAGAGGAACGAAAGATGGAGACTGAAAATAATGAGGATGGAAAAACAGAGGATAGAGAGTTGAATTCAAGTGATAAAGAATC AAATTCAGAAGCTGGAGAGACCCAAGCTCAAGGCAATGAAGCAAATGAAAGCGATCAAACAGAATCAGAGGAGAGCTCAGGTGAAAATAAATCCAAGTCA GATGATGGGGAGAAGAACCCAGACTCAGGGGAGAATGCAAATGAAAATAACCAGGAAGGTGCTATTGAGAATAACGTGGATAGTCAAGAGAATGATCAAA CTTCCATTGAGATTTTACCTGCTGGCACACAGTCAGAACTTCTAAATGAAACCAATACTCGAAATGGGGCTTGGTCGACTCAAGTGGTGGAGTCACAGAA TGAGAAGATATCTCAACAATCTTCAATAGCTAAGGATCAATATGGTCATGGATGGAAACTTTGTAATGTCACTGCTGGACCAGCCTATGTTCCTTGCCTT GATAATTGGTACGTTATAAGAAGGCTTCCAAGCACAAAGCACTATGAACATCGAGAGAGGCACTGTCCTCAAGAAGCTCCCACTTGTTTGGTACCCATAC CTGAAGGATATAGACGCTCAGTTAAGTGGCCTAAAAGCAGGGAAAAGATATGGTTCTATAATGTCCCTAACACCAAGCTTGCCGAGGTTAAGGGGCATCA GAATTGGGTTAAAGTTGCTGGTGAATATCTTACTTTTCCAGGTGGTGGAACTCAGTTCAAGCATGGTGCTCTTCATTATATTGATTTCATTCAGGATTCT CATCCTGATATTGCATGGGGAAAAAGAAGCCGAGTGATATTGGATGTTGGGTGTGGGGTGGCAAGCTTTGGAGGTTATCTTTTGGAAAAAGATGTTCTTG CAATGTCATTTGCTCCCAAGGATGAACATGAAGCCCAGGTTCAATTTGCACTTGAAAGGGGTATCCCTGCGATGTTGGCTGTTATGGGCACAAAGAGATT ACCCTTTCCTAATTCTGTTTTTGATCTTGTTCATTGTGCACGCTGTAGGGTTCCTTGGCACATTGAAGGTGGTAAACTTCTTTTGGAGCTGAATCGGGTG TTGAGGCCTGGTGGTTACTTTGTCTGGTCTGCCACCCCAGTTTATCGAAAGCGTCCAGAAGATGTGGGCATTTGGAAAGCAATGTCCAAACTAACAAAGT CAATGTGCTGGGATCTGGTGGTGATTAAAACGGACACGCTAAATGGTGTTGGTGCAGCAATATATAGAAAGCCAACTTCCAATGACTGCTATAATAATAG ACCGCAAAATGAGCCTCCACTGTGCAAAGAATCTGATGATCCAAATGCAGCGTGGAATGTCCTGCTCGAGGCATGTATGCATAAAGTGCCTGTAGATGCG TCAGTGCGTGGGTCTCATTGGCCTGAGCAATGGCCAAAACGGCTGGAGAAACCACCATACTGGTTGAATTCTCAGGTTGGAGTTTATGGTAAAGCTGCTG CAGAGGATTTTGCTGCTGACTATAAACATTGGAAAAATGTTGTCTCCCAGTCTTATTTGAATGGGATAGGAATCAACTGGTCTTCTGTGAGAAATATCAT GGACATGAGAGCTGTATATGGAGGGTTTGCTGCGGCACTGAAAGACTTGAAAGTGTGGGTTATGAATATAGTCCCAATTGACTCTGCAGACACGCTTCCA ATGATCTATGAGCGTGGTTTGTTTGGAATGTATCATGATTGGTGTGAATCATTCAATACCTATCCTAGAACTTATGATCTTCTCCATGCTGATCATCTCT TCTCCAGTCTAAAAAAGAGGTGCAACTTAGTGGCAGTAATAGCAGAAGTTGATCGGATCCTGAGGCCAGAAGGAAAGCTGATTGTGCGTGACAATGTTGA AATCATTGGTGAGATTGAGAGCCTGGCCAAATCTCTGAAATGGGAGATCCGGATGATTTACTCAAAAGACAATGAGGGACTGCTTTGTGTTCAAAAGACA ACGTGGCGTCCTACGGAATCGGAAACAATAACATCAGCCATCATACAAGCCTGA
AA sequence Show only first row Show all	>Potri.002G075800.2 pacid=42777573 polypeptide=Potri.002G075800.2.p locus=Potri.002G075800 ID=Potri.002G075800.2.v4.1 annot-version=v4.1 MPMGKYSRVDGRKSSNYCSTTTVVVFVALCLVGAWMFISSSVPVQNSDPSSQENVKRVAGENISKHFEDIPGDLPEDATKEDGNAVDSQSASQSDVHDDP KVTEKESESTVEDNKDENRDEKAESKNVVEENQDGKTVSEEERKMETENNEDGKTEDRELNSSDKESNSEAGETQAQGNEANESDQTESEESSGENKSKS DDGEKNPDSGENANENNQEGAIENNVDSQENDQTSIEILPAGTQSELLNETNTRNGAWSTQVVESQNEKISQQSSIAKDQYGHGWKLCNVTAGPAYVPCL DNWYVIRRLPSTKHYEHRERHCPQEAPTCLVPIPEGYRRSVKWPKSREKIWFYNVPNTKLAEVKGHQNWVKVAGEYLTFPGGGTQFKHGALHYIDFIQDS HPDIAWGKRSRVILDVGCGVASFGGYLLEKDVLAMSFAPKDEHEAQVQFALERGIPAMLAVMGTKRLPFPNSVFDLVHCARCRVPWHIEGGKLLLELNRV LRPGGYFVWSATPVYRKRPEDVGIWKAMSKLTKSMCWDLVVIKTDTLNGVGAAIYRKPTSNDCYNNRPQNEPPLCKESDDPNAAWNVLLEACMHKVPVDA SVRGSHWPEQWPKRLEKPPYWLNSQVGVYGKAAAEDFAADYKHWKNVVSQSYLNGIGINWSSVRNIMDMRAVYGGFAAALKDLKVWVMNIVPIDSADTLP MIYERGLFGMYHDWCESFNTYPRTYDLLHADHLFSSLKKRCNLVAVIAEVDRILRPEGKLIVRDNVEIIGEIESLAKSLKWEIRMIYSKDNEGLLCVQKT TWRPTESETITSAIIQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29470			S-adenosyl-L-methionine-depend...		Potri.002G075800 [exp]	0	1
AT5G55230		ATMAP65-1	microtubule-associated protein...		Potri.001G356500 [exp]	1.00	0.8811
AT2G02170			Remorin family protein (.1.2)		Potri.010G098000 [exp]	3.46	0.8492
AT3G20260			Protein of unknown function (D...		Potri.008G004400 [exp]	4.47	0.8602
AT4G19020		CMT2	chromomethylase 2 (.1)		Potri.003G100000 [exp]	5.74	0.8629
AT1G10180			unknown protein		Potri.015G119300 [exp]	7.21	0.8652
AT1G67690			Zincin-like metalloproteases f...		Potri.010G054466 [exp]	8.48	0.8141
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Potri.011G098300 [exp]	13.49	0.8139	Pt-PHB.1
AT5G17410			Spc97 / Spc98 family of spindl...		Potri.010G180700 [exp]	14.28	0.7735
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Potri.001G012200 [exp]	16.73	0.8568	Pt-CALS1.3
AT1G53860			Remorin family protein (.1)		Potri.001G163000 [exp]	16.97	0.8321

Compare expression of checked genes

Potri.002G075800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.