Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21270 507 / 7e-174 WAK2 wall-associated kinase 2 (.1) AT1G21230 497 / 6e-170 WAK5 wall associated kinase 5 (.1) AT1G21250 493 / 3e-168 PRO25, WAK1 cell wall-associated kinase (.1) AT1G21210 486 / 1e-165 WAK4 wall associated kinase 4 (.1) AT1G21240 479 / 8e-163 WAK3 wall associated kinase 3 (.1) AT1G69730 434 / 1e-144 Wall-associated kinase family protein (.1) AT1G16130 428 / 6e-143 WAKL2 wall associated kinase-like 2 (.1) AT1G16150 426 / 8e-142 WAKL4 wall associated kinase-like 4 (.1) AT1G19390 424 / 7e-141 Wall-associated kinase family protein (.1) AT1G79670 421 / 2e-140 WAKL22, RFO1 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G076000 [exp] 998 / 0 AT1G21270 631 / 0.0 wall-associated kinase 2 (.1) Potri.002G076100 [exp] 756 / 0 AT1G21270 559 / 0.0 wall-associated kinase 2 (.1) Potri.003G186100 [exp] 444 / 1e-149 AT1G16260 625 / 0.0 Wall-associated kinase family protein (.1.2) Potri.018G148498 [exp] 427 / 2e-144 AT1G79680 497 / 5e-168 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) Potri.001G038525 [exp] 429 / 1e-143 AT1G16260 642 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G039450 [exp] 429 / 2e-143 AT1G79670 613 / 0.0 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) Potri.001G039200 [exp] 426 / 3e-142 AT1G16260 642 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G040500 [exp] 421 / 1e-140 AT1G16260 635 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G038300 [exp] 420 / 6e-140 AT1G16260 621 / 0.0 Wall-associated kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038077 [exp] 471 / 9e-160 AT1G21270 576 / 0.0 wall-associated kinase 2 (.1) Lus10008105 [exp] 405 / 1e-134 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10004504 [exp] 400 / 7e-133 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10034085 [exp] 396 / 2e-131 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10003063 [exp] 380 / 3e-125 AT1G16130 514 / 2e-173 wall associated kinase-like 2 (.1) Lus10013384 [exp] 342 / 1e-109 AT1G21270 430 / 3e-140 wall-associated kinase 2 (.1) Lus10013383 [exp] 338 / 5e-108 AT1G21270 427 / 4e-139 wall-associated kinase 2 (.1) Lus10013385 [exp] 336 / 1e-107 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Lus10013143 [exp] 274 / 5e-89 AT1G16160 270 / 2e-85 wall associated kinase-like 5 (.1) Lus10014387 [exp] 265 / 2e-81 AT5G02070 493 / 8e-168 Protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0001 [poplar] [flax] EGF PF00008 [poplar] [flax] EGF EGF-like domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.002G075901.1 pacid=42777820 polypeptide=Potri.002G075901.1.p locus=Potri.002G075901 ID=Potri.002G075901.1.v4.1 annot-version=v4.1 ATGTCTAATGCATGTCAAGGACAGAGCAAATGTCATGACCCTGAAAATGGGTCTGGGTACATTTGCAAATGCTTAGATGGCTATCAAGGAAATCCATACC TCCCAAATGGTTGCCAAAACATTAATGAATGTTCAGATCCAAAAGTAGCCCACAATTGCAGCCACACATGCATCGACACCGAAGGGAATTATACATGTTC TTGCCCCAAGGGGTACCATGGAGATGGGAGGATAGATGGAGAACGCTGCATCCGCAATCGATCATCAGTGATTCAGGTCGCTGTCGGAACTGGAGTGGGA CTGATATCTTTGTTGATGGGAATTACTTGGCTGTACTGGGGATACAATAAATGGAAGCTAATGAAGCTCAAAGAGAAGTTCTTTAGGCAAAATGGTGGTC TAATGCTGGAGCAGCAGCTATCAAGAAGGGAAGGACCCGTTACAGAAACGGCAAAAATCTTTTCAGCTGAAGAACTCGAGAAAGCCACTGACAAGTACCA TGAAAGTAGAATTCTTGGCCGTGGAGGTTTTGGTACAGTTTACAAGGGAACTTTAACAGATGGAAGAACTGTTGCAATCAAGAAGTCCAAAACAATCGAT CATAGCCAAATCGAGCAGTTTATCAACGAGGTGGTTGTTCTTTACCAAATCAATCACAGGAATGTGGTGAAGCTTCTAGGATGTTGCTTGGAGACAGAAG TCCCATTACTAGTTTATGAATATGTTGCAAATGGCACCCTCTATGACCACATTCACGACAAGTGTAAGGTGTCGGCCCTCACCTGGGAAATCCGTTTAAA GATAGCTTCTGAAACTGCAGGTGTTCTATCATATTTGCATTCCGCAGCTTCTGTGCCAATCATTCATAGGGATGTCAAGTCTACAAACATACTCCTGGAC AACAGTTACACGGCAAAAGTGTCAGATTTTGGCACTTCTAGGTTCATTCCGCTGGATCAAGTTGAATTGTCAACGATGGTGCAAGGTACTCTAGGATACT TGGACCCTGAGTACTTGCACACAAGCCAACTGACGGACAAAAGTGATGTTTACAGTTTTGGAGTGGTTCTTGTGGAACTACTAACTGGGATGAAGGCAAT TTCCTTCCATAAGCCTGAGGGGGAGAGGAATTTATCATCGTATTTTCTTTGTGCACTGAAAGAAGATCGCCTGGTCCATATTCTTCAGGATTGCATGGTG AACCAGGATAATATTAGGCAGCTCAAGGAAGTTGCCAACATTGCAAAGAAGTGCTTAAGAGTAAAAGGAGAGGAAAGACCCAACATGAAGAACGTAGCAA TGGAATTAGAGGGGCTGAGAACATCTGCAAAACATCCTTGGACTAATGACAAATCAGATGTAAAAGAGACAGAGTACTTGCTTGGTGAATCAGTGGAAAC TGTTCGTTCTGAGGAAATGGCTGGTACAAGTGCTGGATATCACAGTTTATATTTAATGCAATCACAAGGAGATGGCAGATGA
AA sequence Show only first row Show all	>Potri.002G075901.1 pacid=42777820 polypeptide=Potri.002G075901.1.p locus=Potri.002G075901 ID=Potri.002G075901.1.v4.1 annot-version=v4.1 MSNACQGQSKCHDPENGSGYICKCLDGYQGNPYLPNGCQNINECSDPKVAHNCSHTCIDTEGNYTCSCPKGYHGDGRIDGERCIRNRSSVIQVAVGTGVG LISLLMGITWLYWGYNKWKLMKLKEKFFRQNGGLMLEQQLSRREGPVTETAKIFSAEELEKATDKYHESRILGRGGFGTVYKGTLTDGRTVAIKKSKTID HSQIEQFINEVVVLYQINHRNVVKLLGCCLETEVPLLVYEYVANGTLYDHIHDKCKVSALTWEIRLKIASETAGVLSYLHSAASVPIIHRDVKSTNILLD NSYTAKVSDFGTSRFIPLDQVELSTMVQGTLGYLDPEYLHTSQLTDKSDVYSFGVVLVELLTGMKAISFHKPEGERNLSSYFLCALKEDRLVHILQDCMV NQDNIRQLKEVANIAKKCLRVKGEERPNMKNVAMELEGLRTSAKHPWTNDKSDVKETEYLLGESVETVRSEEMAGTSAGYHSLYLMQSQGDGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.002G075901 [exp]	0	1
AT1G35240	ARF	ARF20	auxin response factor 20 (.1)		Potri.003G011066 [exp]	11.87	0.9147
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.002G076000 [exp]	21.30	0.9575
AT1G16260			Wall-associated kinase family ...		Potri.003G185700 [exp]	31.43	0.9443
AT1G16260			Wall-associated kinase family ...		Potri.003G185622 [exp]	38.66	0.9437
AT1G16260			Wall-associated kinase family ...		Potri.003G185688 [exp]	44.42	0.9395
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.002G076100 [exp]	72.72	0.9279
AT1G28710			Nucleotide-diphospho-sugar tra...		Potri.012G112600 [exp]	97.70	0.9300
AT1G67920			unknown protein		Potri.012G044001 [exp]	101.64	0.9290
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Potri.004G192300 [exp]	101.95	0.9255
AT3G25730	AP2_ERF	EDF3	ethylene response DNA binding ...		Potri.003G010763 [exp]	103.22	0.9308

Compare expression of checked genes

Potri.002G075901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.