Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69040 69 / 5e-15 ACR4 ACT domain repeat 4 (.1.2) AT2G03730 67 / 5e-14 ACR5 ACT domain repeat 5 (.1.2) AT1G12420 61 / 5e-12 ACR8 ACT domain repeat 8 (.1) AT3G01990 60 / 9e-12 ACR6 ACT domain repeat 6 (.1) AT5G25320 56 / 3e-10 ACT-like superfamily protein (.1) AT4G22780 55 / 4e-10 ACR7 ACT domain repeat 7 (.1) AT1G76990 52 / 5e-09 ACR3 ACT domain repeat 3 (.1.2.3.4.5) AT5G65890 39 / 0.0002 ACR1 ACT domain repeat 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124144 [exp] 74 / 1e-16 AT1G69040 721 / 0.0 ACT domain repeat 4 (.1.2) Potri.008G109200 [exp] 74 / 1e-16 AT1G69040 723 / 0.0 ACT domain repeat 4 (.1.2) Potri.010G138600 [exp] 74 / 1e-16 AT1G69040 743 / 0.0 ACT domain repeat 4 (.1.2) Potri.003G167800 [exp] 64 / 5e-13 AT1G69040 486 / 1e-170 ACT domain repeat 4 (.1.2) Potri.001G060100 [exp] 63 / 8e-13 AT1G69040 505 / 7e-178 ACT domain repeat 4 (.1.2) Potri.015G100300 [exp] 61 / 3e-12 AT1G69040 483 / 3e-169 ACT domain repeat 4 (.1.2) Potri.001G327000 [exp] 61 / 3e-12 AT3G01990 630 / 0.0 ACT domain repeat 6 (.1) Potri.003G116600 [exp] 61 / 4e-12 AT1G12420 624 / 0.0 ACT domain repeat 8 (.1) Potri.012G083000 [exp] 60 / 9e-12 AT1G69040 493 / 3e-173 ACT domain repeat 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036827 [exp] 69 / 9e-15 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2) Lus10019191 [exp] 66 / 4e-14 AT1G69040 434 / 2e-152 ACT domain repeat 4 (.1.2) Lus10011329 [exp] 63 / 8e-13 AT1G69040 515 / 0.0 ACT domain repeat 4 (.1.2) Lus10003136 [exp] 63 / 9e-13 AT1G69040 520 / 0.0 ACT domain repeat 4 (.1.2) Lus10041543 [exp] 60 / 8e-12 AT3G01990 605 / 0.0 ACT domain repeat 6 (.1) Lus10012550 [exp] 60 / 1e-11 AT3G01990 612 / 0.0 ACT domain repeat 6 (.1) Lus10006662 [exp] 58 / 6e-11 AT4G22780 483 / 4e-170 ACT domain repeat 7 (.1) Lus10018943 [exp] 52 / 9e-09 AT1G76990 686 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10028646 [exp] 52 / 1e-08 AT1G76990 699 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10011715 [exp] 47 / 5e-07 AT5G65890 520 / 0.0 ACT domain repeat 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G076001.1 pacid=42779227 polypeptide=Potri.002G076001.1.p locus=Potri.002G076001 ID=Potri.002G076001.1.v4.1 annot-version=v4.1 ATGCAGAACCTTACTGTTAACTTGTCTAGCCCTGATTTTGAGCCATATATAAGTGTTAATGTTTTGGTTGTGATTGATAATGAAGCTTGCAAGAATGCTA TTGTCATAAGGGAATATTATATCAAGCATATTGATGGGTCCCCTGTAAAATTAGAGGCTGAGAGACAAAGGATTATACAATGTCTTGAAGCAGCCATTGA AAGAAGAGTATCCGAGAAATTCACTCGCATGCTTGTGCAGAATGCTCCATTCAAAGGACAGCTTGCTATTGGGTTTTCTTGGTGTACTAATATACAACTT GTTGGGAACAACTGA
AA sequence Show only first row Show all	>Potri.002G076001.1 pacid=42779227 polypeptide=Potri.002G076001.1.p locus=Potri.002G076001 ID=Potri.002G076001.1.v4.1 annot-version=v4.1 MQNLTVNLSSPDFEPYISVNVLVVIDNEACKNAIVIREYYIKHIDGSPVKLEAERQRIIQCLEAAIERRVSEKFTRMLVQNAPFKGQLAIGFSWCTNIQL VGNN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.002G076001 [exp]	0	1
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.018G090966 [exp]	3.74	0.8309
					Potri.001G248704 [exp]	24.37	0.7464
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.018G149700 [exp]	28.87	0.7947
AT5G23350			GRAM domain-containing protein...		Potri.004G068200 [exp]	31.78	0.7762
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Potri.005G067200 [exp]	48.65	0.7574
					Potri.003G152900 [exp]	77.00	0.7980
AT2G31335			unknown protein		Potri.008G163000 [exp]	190.48	0.7754
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.004G056050 [exp]	237.98	0.7586

Compare expression of checked genes

Potri.002G076001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.