Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21270 557 / 0 WAK2 wall-associated kinase 2 (.1) AT1G21230 515 / 6e-175 WAK5 wall associated kinase 5 (.1) AT1G21250 510 / 5e-173 PRO25, WAK1 cell wall-associated kinase (.1) AT1G21240 488 / 5e-164 WAK3 wall associated kinase 3 (.1) AT1G21210 475 / 3e-159 WAK4 wall associated kinase 4 (.1) AT1G16260 417 / 6e-137 Wall-associated kinase family protein (.1.2) AT1G16130 416 / 3e-136 WAKL2 wall associated kinase-like 2 (.1) AT1G69730 410 / 3e-133 Wall-associated kinase family protein (.1) AT1G16120 404 / 7e-132 WAKL1 wall associated kinase-like 1 (.1) AT1G79670 404 / 1e-131 WAKL22, RFO1 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G076000 [exp] 1184 / 0 AT1G21270 631 / 0.0 wall-associated kinase 2 (.1) Potri.002G075901 [exp] 753 / 0 AT1G21270 507 / 5e-174 wall-associated kinase 2 (.1) Potri.004G192500 [exp] 530 / 0 AT1G16260 525 / 2e-177 Wall-associated kinase family protein (.1.2) Potri.009G157201 [exp] 505 / 2e-170 AT1G16260 500 / 4e-167 Wall-associated kinase family protein (.1.2) Potri.003G186100 [exp] 498 / 4e-168 AT1G16260 625 / 0.0 Wall-associated kinase family protein (.1.2) Potri.003G185688 [exp] 494 / 4e-167 AT1G16260 615 / 0.0 Wall-associated kinase family protein (.1.2) Potri.004G191400 [exp] 494 / 6e-167 AT1G21270 414 / 2e-134 wall-associated kinase 2 (.1) Potri.004G191450 [exp] 489 / 6e-165 AT1G21270 474 / 7e-158 wall-associated kinase 2 (.1) Potri.009G154600 [exp] 489 / 8e-165 AT1G21270 447 / 2e-147 wall-associated kinase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038077 [exp] 594 / 0 AT1G21270 576 / 0.0 wall-associated kinase 2 (.1) Lus10013383 [exp] 438 / 2e-144 AT1G21270 427 / 4e-139 wall-associated kinase 2 (.1) Lus10034085 [exp] 433 / 2e-143 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10013384 [exp] 430 / 2e-141 AT1G21270 430 / 3e-140 wall-associated kinase 2 (.1) Lus10013385 [exp] 423 / 4e-139 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Lus10003063 [exp] 409 / 4e-134 AT1G16130 514 / 2e-173 wall associated kinase-like 2 (.1) Lus10008105 [exp] 340 / 1e-107 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10004504 [exp] 339 / 2e-107 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10014387 [exp] 250 / 3e-74 AT5G02070 493 / 8e-168 Protein kinase family protein (.1) Lus10016737 [exp] 241 / 3e-70 AT1G18390 544 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0001 [poplar] [flax] EGF PF00008 [poplar] [flax] EGF EGF-like domain CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.002G076100.2 pacid=42776750 polypeptide=Potri.002G076100.2.p locus=Potri.002G076100 ID=Potri.002G076100.2.v4.1 annot-version=v4.1 ATGAGAATTCGAGGAATGGCCTTACAGTTCACAATAACAGGAGTGCTGTTGTTAGCAGCAGTTACAGCAGCAACAGAGCTTCCTATAGCGAAGCCTGGAT GCCAAGATAGATGTGGGAATGTTAGTATCCCATATCCATTTGGCACGGGAGAAGATTGCTACTACGACTCTAAGTTCCTCATAACTTGCAACCATTCTTT CAACCCTCCACAAGCGTTTATAGGAAAAAGTGACTTAAATTTCACAGAAATAACCCTTGATGGGAAGCTTCGCCTCACGCAATATATAGCTAAGGATTGC TATAATCGGGCAGGTGCACCAACAGAGAGCAACACACCCTGGATAAACCTACCCCCCCAAGGTCCGTACGTTTTTTCTGACACTGACAATATGTTCGTCG CTATCGGCTGTGATACTTACGCTGAACTGCAAGGTTTCCGAGAAGACAAGAATGATACATACGTGGTAGGATGCATTTCCAAATGTAGCAACGAAAAATA TGTACCAAACACATGCTCCGGAATCGGTTGCTGCCAAACCTCCATTGCCAAAGGAATTAAGTACTTCGAAGTGAGCTTGTCTAGTTACACTAATCATACG GGAATCTGGGAATTCAATCCTTGCAGCTTTGCCTTCATTATTGAAGAAAAGCAGTTCAGCTTTTTTCCAAGTAACCTGTCGGATTTGAAGGAAGTAAGCG AGGTTCCTATTATAGTGGATTGGAGTATTGGGCACAATAACTGCGAAACCTTGGAAAAGAACAAGATGTCTAATGCATGTCAAGGACAGAGCAAATGTCA TGACCCTGAAAATGGGTCTGGGTACATTTGCAAATGCTTAGATGGCTTTCAAGGAAATCCATACCTCCCAAATGGTTGCCGAAACATTAATGAATGCTCA GATCCAAAAGTAGCCCGCAATTGCAGCCACAATTGCATCGACACCGAAGGGAATTATACATGTTCTTGCCCCAAGGGGTACCATGGAGATGGGAGAATAG ATGGAGAACGCTGCATCCGCAATCGATCATCAGTGATTCAGGTCGCTGTCGGAATTGCAGTGGGACTGACATCTTTGTTGATGGGAATTACTTGGCTGTA CTGGGGATACAATAAATGGAAGCTAATGAAGCTCAAAGAGAAGTTCTTTAGGCAAAATGGTGGTCTAATGCTGGAGCAGCAGCTATCAAGAAGGGAAGGA CCCGTTACAGAAACGGCAAAAATCTTTTCAGCTGCAGAACTCGAGAAAGCCACAGACAAGTACCATGAAAGTAGAATTCTTGGCCGTGGAGGTTTTGGTA CAGTTTACAAGGGAACTTTAACAGATGGAAGAACTGTTGCAATCAAGAAGTCCAAAACAATCGATCATAGCCAAATCGAGCAGTTTATCAATGAGGTGGT TGTGCTTTACCAAATCAATCACAGGAATGTGGTGAAGCTTCTAGGATGTTGCTTGGAGACAGAAGTCCCATTACTAGTTTATGAATATGTTGCAAATGGC ACCCTTTATGACCACATTCACGACAAGAGTAAGGTGTCGGCCTTCACCTGGGAAATCCGTTTAAAGATAGCTTCTGAAACTGCAGGTGTTCTATCATATT TGCATTCCGCAGCTTCTGTGCCAATCATTCATAGGGATGTCAAGTCTACAAACATACTCCTGGACAACAGTTACACGGCAAAAGTGTCAGATTTTGGCAC TTCTAGGTTAATTCCGTTGGATCAAGTTGAATTGTCAACAATGGTGCAAGGCACTCTAGGATACTTAGACCCTGAGTACTTGCACACAAGCCAACTGACG GACAAAAGTGATGTTTACAGTTTTGGAGTGGTTCTTGTGGAACTACTAACTGGGATGAAGGCAATTTCCTTCGATAAGCCTGAGGGGAGAGGAATTTATC GGCGTATTTTCTTTGTGCACTGA
AA sequence Show only first row Show all	>Potri.002G076100.2 pacid=42776750 polypeptide=Potri.002G076100.2.p locus=Potri.002G076100 ID=Potri.002G076100.2.v4.1 annot-version=v4.1 MRIRGMALQFTITGVLLLAAVTAATELPIAKPGCQDRCGNVSIPYPFGTGEDCYYDSKFLITCNHSFNPPQAFIGKSDLNFTEITLDGKLRLTQYIAKDC YNRAGAPTESNTPWINLPPQGPYVFSDTDNMFVAIGCDTYAELQGFREDKNDTYVVGCISKCSNEKYVPNTCSGIGCCQTSIAKGIKYFEVSLSSYTNHT GIWEFNPCSFAFIIEEKQFSFFPSNLSDLKEVSEVPIIVDWSIGHNNCETLEKNKMSNACQGQSKCHDPENGSGYICKCLDGFQGNPYLPNGCRNINECS DPKVARNCSHNCIDTEGNYTCSCPKGYHGDGRIDGERCIRNRSSVIQVAVGIAVGLTSLLMGITWLYWGYNKWKLMKLKEKFFRQNGGLMLEQQLSRREG PVTETAKIFSAAELEKATDKYHESRILGRGGFGTVYKGTLTDGRTVAIKKSKTIDHSQIEQFINEVVVLYQINHRNVVKLLGCCLETEVPLLVYEYVANG TLYDHIHDKSKVSAFTWEIRLKIASETAGVLSYLHSAASVPIIHRDVKSTNILLDNSYTAKVSDFGTSRLIPLDQVELSTMVQGTLGYLDPEYLHTSQLT DKSDVYSFGVVLVELLTGMKAISFDKPEGRGIYRRIFFVH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.002G076100 [exp]	0	1
AT1G28710			Nucleotide-diphospho-sugar tra...		Potri.012G112600 [exp]	3.74	0.9874
AT1G76980			unknown protein		Potri.007G104500 [exp]	8.48	0.9773
AT1G16260			Wall-associated kinase family ...		Potri.004G192500 [exp]	9.48	0.9725
					Potri.017G003866 [exp]	18.33	0.9756
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.004G192100 [exp]	18.97	0.9721
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Potri.015G104400 [exp]	20.04	0.9430
AT5G27060		AtRLP53	receptor like protein 53 (.1)		Potri.011G054500 [exp]	21.21	0.9613
					Potri.001G061301 [exp]	21.72	0.9464
AT1G16260			Wall-associated kinase family ...		Potri.003G185700 [exp]	28.33	0.9720
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Potri.004G192300 [exp]	28.86	0.9667

Compare expression of checked genes

Potri.002G076100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.