Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54160 106 / 1e-28 ATOMT1 O-methyltransferase 1 (.1) AT5G53810 97 / 9e-25 O-methyltransferase family protein (.1) AT1G21100 94 / 1e-23 IGMT1 indole glucosinolate O-methyltransferase 1, O-methyltransferase family protein (.1) AT1G21130 93 / 1e-23 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2) AT1G77520 92 / 6e-23 O-methyltransferase family protein (.1) AT1G21120 88 / 1e-21 IGMT2 indole glucosinolate O-methyltransferase 2, O-methyltransferase family protein (.1) AT1G21110 87 / 3e-21 IGMT3 indole glucosinolate O-methyltransferase 3, O-methyltransferase family protein (.1) AT1G77530 84 / 6e-20 O-methyltransferase family protein (.1) AT1G76790 83 / 1e-19 IGMT5 indole glucosinolate O-methyltransferase 5, O-methyltransferase family protein (.1) AT1G63140 78 / 3e-18 O-methyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G003100 [exp] 115 / 5e-32 AT5G54160 583 / 0.0 O-methyltransferase 1 (.1) Potri.012G006400 [exp] 115 / 6e-32 AT5G54160 605 / 0.0 O-methyltransferase 1 (.1) Potri.014G106600 [exp] 91 / 1e-22 AT5G54160 416 / 3e-145 O-methyltransferase 1 (.1) Potri.013G017210 [exp] 85 / 4e-21 AT5G54160 237 / 5e-77 O-methyltransferase 1 (.1) Potri.002G180600 [exp] 81 / 4e-19 AT5G54160 413 / 2e-144 O-methyltransferase 1 (.1) Potri.002G180466 [exp] 80 / 1e-18 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180500 [exp] 80 / 1e-18 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180433 [exp] 80 / 1e-18 AT5G54160 412 / 4e-144 O-methyltransferase 1 (.1) Potri.011G150500 [exp] 77 / 1e-17 AT5G54160 364 / 2e-125 O-methyltransferase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032929 [exp] 111 / 3e-30 AT5G54160 601 / 0.0 O-methyltransferase 1 (.1) Lus10015576 [exp] 110 / 8e-30 AT5G54160 595 / 0.0 O-methyltransferase 1 (.1) Lus10005133 [exp] 71 / 2e-15 AT5G54160 381 / 1e-131 O-methyltransferase 1 (.1) Lus10002667 [exp] 69 / 2e-14 AT5G54160 368 / 1e-126 O-methyltransferase 1 (.1) Lus10006146 [exp] 67 / 8e-14 AT5G54160 338 / 5e-115 O-methyltransferase 1 (.1) Lus10002669 [exp] 61 / 1e-11 AT5G54160 376 / 5e-130 O-methyltransferase 1 (.1) Lus10002668 [exp] 54 / 1e-09 AT1G51990 102 / 2e-25 O-methyltransferase family protein (.1.2) Lus10014400 [exp] 47 / 5e-07 AT3G53140 562 / 0.0 O-methyltransferase family protein (.1) Lus10023892 [exp] 44 / 9e-06 AT3G53140 560 / 0.0 O-methyltransferase family protein (.1) Lus10030188 [exp] 43 / 2e-05 AT5G54160 213 / 9e-68 O-methyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF08100 [poplar] [flax] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.002G076766.1 pacid=42778402 polypeptide=Potri.002G076766.1.p locus=Potri.002G076766 ID=Potri.002G076766.1.v4.1 annot-version=v4.1 ATGGTACTGAAATCAGCCATTGAACTCGATATCATAGAAATCATCTTCACAGCTACTAGTGAAGGTGGCTGCGCATGCATCTCAGTGATCTCACCTGCCA AGATTGCAGCTAGAATTCCCTCAAAGAACCCAGATGCATCCGTCTTGCTAGACCGAATGCTGCGTCTTTTGGCAAGCTATGATATACTCAAGTGCTCAAC ATGCATTAAAGAGAACGGGGAAGTTGAGAGAGCGTATAGTGAAGGACCTACATGCAAGTTTCTTGTTAAATTGAAGGTGGAAGTGGTGGATCTGTCGCCC CTTTGTTTTTCGTTGCATCATTATGAGGTCTTCATGAAAAGCTGGTACCTCCTTAATGATGCTATACTTGAAGGGGGATGA
AA sequence Show only first row Show all	>Potri.002G076766.1 pacid=42778402 polypeptide=Potri.002G076766.1.p locus=Potri.002G076766 ID=Potri.002G076766.1.v4.1 annot-version=v4.1 MVLKSAIELDIIEIIFTATSEGGCACISVISPAKIAARIPSKNPDASVLLDRMLRLLASYDILKCSTCIKENGEVERAYSEGPTCKFLVKLKVEVVDLSP LCFSLHHYEVFMKSWYLLNDAILEGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.002G076766 [exp]	0	1
AT5G45030			Trypsin family protein (.1.2)		Potri.011G143200 [exp]	6.78	0.6939
AT4G33985			Protein of unknown function (D...		Potri.005G138100 [exp]	12.24	0.6747
AT5G17600			RING/U-box superfamily protein...		Potri.003G093100 [exp]	16.46	0.6991
AT5G08335		ATICMTB, ATSTE1...	ARABIDOPSIS THALIANA ISOPRENYL...		Potri.007G074500 [exp]	17.02	0.6661
AT1G70280			NHL domain-containing protein ...		Potri.008G147700 [exp]	18.73	0.6508
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Potri.015G105500 [exp]	25.82	0.6321
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Potri.001G094700 [exp]	27.49	0.6712
AT3G11760			unknown protein		Potri.016G067600 [exp]	28.46	0.6436
AT1G03010			Phototropic-responsive NPH3 fa...		Potri.002G209700 [exp]	29.08	0.6581
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Potri.002G046900 [exp]	29.73	0.5887

Compare expression of checked genes

Potri.002G076766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.