Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77250 332 / 3e-107 RING/FYVE/PHD-type zinc finger family protein (.1) AT3G01460 70 / 4e-12 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT5G24330 57 / 1e-08 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) AT3G08020 54 / 2e-07 PHD finger family protein (.1) AT5G09790 50 / 2e-06 PDE336, SDG15, ATXR5 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) AT4G29940 50 / 5e-06 HD PRHA pathogenesis related homeodomain protein A (.1.2) AT1G79350 50 / 5e-06 EMB1135 embryo defective 1135, RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G44800 49 / 1e-05 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT4G14700 48 / 2e-05 ORC1, ATORC1A, ORC1A origin recognition complex 1 (.1) AT3G52100 47 / 3e-05 RING/FYVE/PHD-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G183700 [exp] 902 / 0 AT1G77250 315 / 2e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.017G072460 [exp] 66 / 5e-11 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1) Potri.015G009632 [exp] 57 / 2e-08 AT5G24330 483 / 1e-172 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.009G059500 [exp] 57 / 3e-08 AT3G08020 763 / 0.0 PHD finger family protein (.1) Potri.009G059700 [exp] 56 / 6e-08 AT3G08020 748 / 0.0 PHD finger family protein (.1) Potri.012G018300 [exp] 54 / 2e-07 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.001G264800 [exp] 53 / 6e-07 AT3G08020 701 / 0.0 PHD finger family protein (.1) Potri.009G072600 [exp] 52 / 2e-06 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.005G058000 [exp] 49 / 5e-06 AT5G09790 481 / 2e-170 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029733 [exp] 454 / 1e-153 AT1G77250 313 / 5e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10042764 [exp] 452 / 4e-153 AT1G77250 301 / 1e-95 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10028655 [exp] 358 / 7e-117 AT1G77250 259 / 1e-79 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10000973 [exp] 363 / 2e-113 AT1G77260 652 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030625 [exp] 65 / 2e-10 AT3G01460 706 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10030864 [exp] 65 / 2e-10 AT3G01460 511 / 2e-152 methyl-CPG-binding domain 9 (.1) Lus10008796 [exp] 65 / 2e-10 AT3G01460 1574 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10016404 [exp] 54 / 5e-07 AT3G08020 569 / 0.0 PHD finger family protein (.1) Lus10019715 [exp] 52 / 1e-06 AT3G08020 726 / 0.0 PHD finger family protein (.1) Lus10008495 [exp] 50 / 5e-06 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Potri.002G076900.3 pacid=42778132 polypeptide=Potri.002G076900.3.p locus=Potri.002G076900 ID=Potri.002G076900.3.v4.1 annot-version=v4.1 ATGGTTGGTGAAGAGGGAATGGGCAATGGTGAGGGTACAGAAGAAATAGTTCAGCCCTTAAAGATTGAAGCAATGGACAATGGGTTTGGAAATGACGGTG TTGAAGCAAGCTCTGGCAGCAGTGAAGGTTTTCGAACTTACAAGAGACGCAGGAACACGAGGTCAAGTTTGGATGGGAAAGGTCAACAGGATGGGAAATC TTTTATGGAAGCTGCTAGTAGATTGGCAGACCAGACCATAAAGAATGATTCACAGGACCATCTTCGTGAGAATCATGCTTCTTTGAATCATTCAAGTGAC GTTTCACAGAGGCAGTGGAGAAAATTTGTCCTTGACTACATGTATCAATCATCAAGTAATGATGAACATGGCATACAGAGGTGCATCAGGGATGCACTTA TGATGGCAGAATCTGGTAACTGTAATGCAGATTGGCATAAGTCACCTTCAATGGGGCGGATGGCTAATGGAACTCACAGCACAGCTAAAGGGCATGTAGG TGTCATTTCAAATGGAACTTTGGAAGAATCACAGCATCACAGTGTAACTGACTTGTGCCAGCATGCTTTCCTTAACACCTTACTGTCAGAAAAGTTCACC TCTCTTTGTAAGCTACTGTTTGAAAATTTCAAAGGAATGACGACTGACAGCATTCTTAGCCTGAATTTCATAGACAAAAGGATGAAAGAGGGAGCTTATG ACCGTTTGCCTGTGCTTTTCTGTGAGGATATTGAGCAGTTCTGGAGAAAACTTCAAGGTTTTGGTGCTGAATTAATCTCTCTCGCAAAGAGCCTATCAAA CATATCAAAGACTTGCTATAATGAACAGGTGGGAGGATTAGTAGACTGTACATTTGAAGATAAAAAGCATGAGGATTCCAATTCTCATGGTAAGCCAGAG CAAACAGATGCTTGTTATGTCTACAGAGTCTGCAGTTGCAGGCGTTGTGGGGAGAAGGCAGATGGGAGGGATTGTTTAGTTTGTGATTCATGTGAGGAAA TGTACCATGTCTCTTGTATTGTGCCAGCTGTCAGAGAGATTCCCCCCAAAAGCTGGTACTGTCACAACTGCACAACAAGTGGAATGGGATCCCCTCATAA GAATTGTGTAGCATGTGAGAGATTGAGTTGCTGCAGGATCCAAAATAATCAAGCTGATGATGAAATTGGTTTATCAACTCAAGAACCATTCAATGATTTT GAAGAGGCATCAAATTTTAGCGCGAATAATGAGGTCAAACTTTCATCAGAAGGGACTGGAAACGTGTGCACCTGTAAAATCTGTGGAAGTCCAGTGGGTA ATGGAGAGAAGATAAAGATTTGTGATCACTCTGAATGCCCTGGCAAGTACTACCATGTGAGATGCTTGACAACGAGGCAGATAGATTCATGTGGTCATCG TTGGTATTGCCCTTCTTGTTTATGCAGAGTTTGCATCACTGATAGAGATGATGATAAGATTGTTTTATGTGATGGCTGTGACCATGCATACCACCTTTAT TGCATGATTCCACCACGCATTTCTGTACCAAAAGGGAAATGGTTTTGCAGACAGTGTGATGTGAAAATACAGCGATTACGCAGGGTACGGAGGGCATATG AGAAATCTGAAAGTCATCGGAAAAAGAATGATGAGGGGGTTAAAAAGGAATCTGAAAACCTCAAGAAACTTTACGAGGAGGGTGGAGAAGAATCAGATAA AGGTAGAGGAATGGACATGCTTATAACTGCAGCACTAAATTGTGAAGTTGGCTGCCAATCGAATGAAGAGTTGAAAAGCATGTAA
AA sequence Show only first row Show all	>Potri.002G076900.3 pacid=42778132 polypeptide=Potri.002G076900.3.p locus=Potri.002G076900 ID=Potri.002G076900.3.v4.1 annot-version=v4.1 MVGEEGMGNGEGTEEIVQPLKIEAMDNGFGNDGVEASSGSSEGFRTYKRRRNTRSSLDGKGQQDGKSFMEAASRLADQTIKNDSQDHLRENHASLNHSSD VSQRQWRKFVLDYMYQSSSNDEHGIQRCIRDALMMAESGNCNADWHKSPSMGRMANGTHSTAKGHVGVISNGTLEESQHHSVTDLCQHAFLNTLLSEKFT SLCKLLFENFKGMTTDSILSLNFIDKRMKEGAYDRLPVLFCEDIEQFWRKLQGFGAELISLAKSLSNISKTCYNEQVGGLVDCTFEDKKHEDSNSHGKPE QTDACYVYRVCSCRRCGEKADGRDCLVCDSCEEMYHVSCIVPAVREIPPKSWYCHNCTTSGMGSPHKNCVACERLSCCRIQNNQADDEIGLSTQEPFNDF EEASNFSANNEVKLSSEGTGNVCTCKICGSPVGNGEKIKICDHSECPGKYYHVRCLTTRQIDSCGHRWYCPSCLCRVCITDRDDDKIVLCDGCDHAYHLY CMIPPRISVPKGKWFCRQCDVKIQRLRRVRRAYEKSESHRKKNDEGVKKESENLKKLYEEGGEESDKGRGMDMLITAALNCEVGCQSNEELKSM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77250			RING/FYVE/PHD-type zinc finger...		Potri.002G076900 [exp]	0	1
AT4G00500			alpha/beta-Hydrolases superfam...		Potri.014G083600 [exp]	1.00	0.8480
AT5G06810			Mitochondrial transcription te...		Potri.016G048300 [exp]	2.00	0.8349
AT2G24530			unknown protein		Potri.003G187400 [exp]	10.95	0.7970
AT3G02280			Flavodoxin family protein (.1)		Potri.004G101100 [exp]	12.36	0.7898
					Potri.003G012451 [exp]	15.68	0.8078
AT1G73970			unknown protein		Potri.008G016000 [exp]	17.66	0.8020
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.010G056900 [exp]	17.66	0.8169
AT1G27840		ATCSA-1	Transducin/WD40 repeat-like su...		Potri.014G016100 [exp]	17.86	0.7969
AT3G09360			Cyclin/Brf1-like TBP-binding p...		Potri.001G246100 [exp]	18.43	0.8156
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Potri.001G170200 [exp]	18.89	0.8053

Compare expression of checked genes

Potri.002G076900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.