Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08455 369 / 3e-130 BTB/POZ domain-containing protein (.1) AT1G01640 73 / 2e-15 BTB/POZ domain-containing protein (.1.2) AT3G56230 73 / 9e-15 BTB/POZ domain-containing protein (.1) AT4G37610 66 / 3e-12 BT5 BTB and TAZ domain protein 5 (.1) AT3G48360 65 / 6e-12 ATBT2, BT2 BTB and TAZ domain protein 2 (.1) AT2G39760 63 / 4e-11 ATBPM3 BTB/POZ/MATH-domains containing protein (.1.2) AT1G21780 62 / 8e-11 BTB/POZ domain-containing protein (.1.2) AT1G55760 61 / 2e-10 BTB/POZ domain-containing protein (.1) AT2G05330 59 / 2e-10 BTB/POZ domain-containing protein (.1) AT5G13060 60 / 6e-10 ABAP1 ARMADILLO BTB protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G183600 [exp] 491 / 3e-178 AT4G08455 342 / 2e-119 BTB/POZ domain-containing protein (.1) Potri.013G083800 [exp] 76 / 9e-16 AT3G56230 305 / 2e-104 BTB/POZ domain-containing protein (.1) Potri.001G468700 [exp] 68 / 5e-13 AT1G55760 522 / 0.0 BTB/POZ domain-containing protein (.1) Potri.005G210000 [exp] 64 / 3e-11 AT5G19330 977 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.002G052700 [exp] 62 / 1e-10 AT5G19330 994 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.015G087700 [exp] 60 / 3e-10 AT5G63160 404 / 8e-141 BTB and TAZ domain protein 1 (.1) Potri.012G091400 [exp] 59 / 5e-10 AT5G63160 404 / 7e-141 BTB and TAZ domain protein 1 (.1) Potri.002G082800 [exp] 59 / 1e-09 AT1G21780 535 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.010G199200 [exp] 58 / 2e-09 AT2G39760 528 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042763 [exp] 387 / 3e-137 AT4G08455 354 / 1e-124 BTB/POZ domain-containing protein (.1) Lus10029732 [exp] 382 / 5e-135 AT4G08455 354 / 2e-124 BTB/POZ domain-containing protein (.1) Lus10013670 [exp] 72 / 4e-14 AT3G48360 371 / 6e-128 BTB and TAZ domain protein 2 (.1) Lus10041235 [exp] 62 / 4e-11 AT3G06190 339 / 8e-117 BTB-POZ and MATH domain 2 (.1.2) Lus10021946 [exp] 62 / 8e-11 AT3G06190 620 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Lus10034070 [exp] 61 / 2e-10 AT5G19330 1092 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10010527 [exp] 61 / 3e-10 AT5G19330 1103 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10008348 [exp] 60 / 4e-10 AT1G55760 516 / 0.0 BTB/POZ domain-containing protein (.1) Lus10027101 [exp] 59 / 5e-10 AT1G55760 389 / 3e-136 BTB/POZ domain-containing protein (.1) Lus10029677 [exp] 59 / 1e-09 AT1G21780 538 / 0.0 BTB/POZ domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Potri.002G077000.1 pacid=42779255 polypeptide=Potri.002G077000.1.p locus=Potri.002G077000 ID=Potri.002G077000.1.v4.1 annot-version=v4.1 ATGAGAGGCCACCTCTGTACAGCGTCCCGGGTAGACACAGAATGCGAGACTGACTCCGACTCCGAAACCATGAGGTGCATATCTTGTAAGGAGTACTACA GCAGATGCGATGCCGGAACTTGCAAAGAGTGTTACGAGGAAGCAAGCGATACTGAAGAAGAGCTTAAAAGAGAGATCGAAGATCTCAAAGCTAAAGTTGC CTTCTTGCGTTTCTGGTCTCCTCTTGATCTCCACATCACTCATCGCTCCCCAGCTGGCCCTTGCTTCACCGATGTCGTTTTGATTGCTTCCTCCGATGAT GGGTTTATCGGGACTCCATCCGTGCCTGTTCCTGCTCACAAGGCTGTTTTGGTGAGCCGTTCCCCAGTCTTCAAAGCGATGCTTGAGAATGAGATGGAAG AAAGCAGGAGTGGCACCATCAAGATCAGTGATGTATCATATGATGCACTTCGAAGCTTTGTCAACTATCTGTACACTGCTGAAGCGTGCCTTGATGAGCA GATGGCCTGTGACCTTTTAGTATTGGCTGAAAAATACGAGGTGAAGCATCTCAAGGCCTATTGTGAGAAGTTTTTGGTGTCAAAACTGAACTGGGACAAC TCAGTCATGAGCTATGCCTTTGCCCATCAGCATAATGCAAAGCATATGCTTGAAACAGCGTTGTCATTGATCACTGACAACATGGACAAACTTACCAAAA GGAAGGAATACATAGAGCTTGTGGAAGAGGATCCCCGGCTTGTCGTGGAGATTTATGAAGCATATCTGTCCAAACAGGTTAATACAGCAGCGCACAAGGA TTCTTCTTCCATGAAGCCATAG
AA sequence Show only first row Show all	>Potri.002G077000.1 pacid=42779255 polypeptide=Potri.002G077000.1.p locus=Potri.002G077000 ID=Potri.002G077000.1.v4.1 annot-version=v4.1 MRGHLCTASRVDTECETDSDSETMRCISCKEYYSRCDAGTCKECYEEASDTEEELKREIEDLKAKVAFLRFWSPLDLHITHRSPAGPCFTDVVLIASSDD GFIGTPSVPVPAHKAVLVSRSPVFKAMLENEMEESRSGTIKISDVSYDALRSFVNYLYTAEACLDEQMACDLLVLAEKYEVKHLKAYCEKFLVSKLNWDN SVMSYAFAHQHNAKHMLETALSLITDNMDKLTKRKEYIELVEEDPRLVVEIYEAYLSKQVNTAAHKDSSSMKP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08455			BTB/POZ domain-containing prot...		Potri.002G077000 [exp]	0	1
AT1G54150			E3 Ubiquitin ligase family pro...		Potri.003G065500 [exp]	1.73	0.8591
AT1G79870			D-isomer specific 2-hydroxyaci...		Potri.013G046150 [exp]	5.29	0.8512
					Potri.018G111650 [exp]	12.24	0.8139
AT1G27050	HD	ATHB54	homeobox protein 54 (.1)		Potri.010G034500 [exp]	12.96	0.8116
					Potri.002G146750 [exp]	14.14	0.8258
AT1G52080		AR791	actin binding protein family (...		Potri.003G047200 [exp]	14.59	0.8421
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.017G150100 [exp]	14.96	0.8133
AT5G07910			Leucine-rich repeat (LRR) fami...		Potri.015G048800 [exp]	19.74	0.7569
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Potri.008G066800 [exp]	19.74	0.8047
AT1G11360			Adenine nucleotide alpha hydro...		Potri.011G039800 [exp]	19.89	0.7782

Compare expression of checked genes

Potri.002G077000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.