Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77260 907 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 868 / 0 Putative methyltransferase family protein (.1) AT2G39750 865 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29470 503 / 2e-169 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G34300 499 / 5e-168 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G51070 501 / 3e-167 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G23300 486 / 7e-165 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G64030 492 / 3e-164 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G14360 484 / 4e-164 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G04430 479 / 3e-162 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G059500 [exp] 875 / 0 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G199300 [exp] 844 / 0 AT2G39750 998 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G118100 [exp] 507 / 8e-169 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G184500 [exp] 502 / 3e-168 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G185000 [exp] 494 / 5e-168 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G075800 [exp] 496 / 5e-166 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.007G104000 [exp] 488 / 1e-162 AT5G64030 1022 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G017400 [exp] 492 / 6e-162 AT3G51070 960 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G065200 [exp] 484 / 5e-161 AT5G64030 1078 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030155 [exp] 883 / 0 AT2G39750 1049 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10001013 [exp] 871 / 0 AT2G39750 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004702 [exp] 863 / 0 AT2G39750 1021 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10040268 [exp] 821 / 0 AT2G39750 967 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10042762 [exp] 770 / 0 AT1G77260 741 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10029731 [exp] 763 / 0 AT1G77260 732 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028656 [exp] 732 / 0 AT1G77260 744 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10000973 [exp] 638 / 0 AT1G77260 652 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018954 [exp] 499 / 1e-167 AT1G29470 1047 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10042767 [exp] 497 / 1e-166 AT1G29470 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03141 [poplar] [flax] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.002G077100.8 pacid=42780109 polypeptide=Potri.002G077100.8.p locus=Potri.002G077100 ID=Potri.002G077100.8.v4.1 annot-version=v4.1 ATGAAACCTTCCGCCACAATCACCTCCTCCACCGCCACATTAGATGTCGTAAAAGCCCCAAACTTCGTCAGAGTTACGGCCATTACCATCTTCTCCTTCT CTGTTATCACCCTCCTCTACCTCTTCCCTTCCTCCCCCTTCCCCTCCTCTATCTCCTTCTCTCCCTCCTTCTCCATCACCTCCCCACAACAAATAAAAAA TAACGCGTCCTTGGTTTCACCTCGTCCCAAAAAAACCCGGCCCCCACCACCTCCGACGGTGGGGGAGAGGACGGGGATAGTGGACGAGAACGGTGCAATG GCGGAGGATTTTGTAATCGGGGAGTTTGATCCGAGTGCAATGGATGAATTTAGAAATTTAACTGGTGGCAGAGAGGAGACATCGACGAAAGAAGATGGTA AACTAACCAGGGTTAAGTATGAGAGATTTAGAGTGTGTGAGGAGAGTACGAGAGATTACATACCATGTTTGGATAATGTGGAGGAAATTAAGAGGTTGAA TTTGAGTGGAAGTTTGGTGATATATGAGAGGCATTGCCCTGAAGAAGGTAAGAGGTTGGATTGCTTGGTGCCTATGCCTAAAGGGTATAAGAGGTCTATA CCTTGGCCTAGGAGTCGAGACGAGGTGTGGTTCAGTAATGTGCCACATACACGTCTGGTCGAAGATAAGGGTGGCCAAAATTGGATAGCATTAAAAAAGG ATAAGTTTGTTTTCCCAGGAGGAGGAACTCAATTTATTCACGGAGCAGATCAATATTTAAACCAGATTTCAGAGATGGTTCCTGAAATTGCATTTGGTCA GCATACCCGCATTGCATTAGACATTGGTTGTGGAGTGGCAAGTTTTGGTGCCTTTTTGTTACAGCGTAATGTGACTACCTTGTCAATAGCACCAAAAGAT GTCCATGAGAACCAGATTCAGTTTGCACTGGAGCGTGGTGTTCCTGCAATGGCAGCTGTATTTTCAACACGGCGTTTGTTGTACCCAAGCCAAGCATTTG ATTTGATACACTGTTCAAGATGTAGAATTGATTGGACTCGTGATGATGGAATTTTGATTCTTGAGGTGAACAGAATGCTAAGGGCAGGAGGCTACTTTGT CTGGGCAGCACAACCTGTATATAAACATGAAGAAAATCTCCAAGAACAATGGAAAGAAATGCAGGACCTAACTAGACGCATTTGTTGGGAACTTGTAAAG AAGGAAGGATATATTGCCATTTGGCGGAAACCTTTAAACAACAGCTGCTATCTTAGTCGTGATGGTGGGGCACAACCTCCTCTATGTGATTCCAATGATG ATCCAGACAGTGTTTGGTATGTCAGTCTGAGGTCATGCATAACTAGATTGCCTGAGAATGGTTATGGAGCTAATGTCACTTCATGGCCTGTACGCCTTCA TTATCCACCAGATAGACTCCAGAGCATAAGAATGGATGCCACCTTTTCCAGAAAAGAACTTTTCAAGGCAGAGTCAAAATATTGGAATGAGATTATAGAA AGTTATGTCAGAGCTTTCCACTGGAAACATATGAATTTTCGAAATGTGATGGACATGAGAGCGGGATTTGGAGGGTTTGCTGCAGCATTACATGATCTGG ATGTTGATTGCTGGGTTATGAATGTTGTTCCCGTGAGTGAGTTCAATACTTTACCTGTGATTTATGACCGGGGACTTATTGGAGTCATGCATGACTGGTG CGAGACATTTGATACATACCCGAGAACTTATGACCTATTGCATGCAGCAGGTTTGTTCTCTGCCGAGCAGAAAAGGCACAAATGCAAAGTCTCAAGTATC ATGCTTGAGATGGATCGCATGCTAAGGCCTGGTGGAACTGTTTATATACGTGACACAATATCTGTTATGAGCGAGCTTCAAGAGATAGCAACTGCCACGA GATGGGTGTGTACACTTCGGGACACGGGTGAAGGTCCCCATGCGAGTTGGAAAATTTTAACTTGCGATAAAAGGATGCCATGA
AA sequence Show only first row Show all	>Potri.002G077100.8 pacid=42780109 polypeptide=Potri.002G077100.8.p locus=Potri.002G077100 ID=Potri.002G077100.8.v4.1 annot-version=v4.1 MKPSATITSSTATLDVVKAPNFVRVTAITIFSFSVITLLYLFPSSPFPSSISFSPSFSITSPQQIKNNASLVSPRPKKTRPPPPPTVGERTGIVDENGAM AEDFVIGEFDPSAMDEFRNLTGGREETSTKEDGKLTRVKYERFRVCEESTRDYIPCLDNVEEIKRLNLSGSLVIYERHCPEEGKRLDCLVPMPKGYKRSI PWPRSRDEVWFSNVPHTRLVEDKGGQNWIALKKDKFVFPGGGTQFIHGADQYLNQISEMVPEIAFGQHTRIALDIGCGVASFGAFLLQRNVTTLSIAPKD VHENQIQFALERGVPAMAAVFSTRRLLYPSQAFDLIHCSRCRIDWTRDDGILILEVNRMLRAGGYFVWAAQPVYKHEENLQEQWKEMQDLTRRICWELVK KEGYIAIWRKPLNNSCYLSRDGGAQPPLCDSNDDPDSVWYVSLRSCITRLPENGYGANVTSWPVRLHYPPDRLQSIRMDATFSRKELFKAESKYWNEIIE SYVRAFHWKHMNFRNVMDMRAGFGGFAAALHDLDVDCWVMNVVPVSEFNTLPVIYDRGLIGVMHDWCETFDTYPRTYDLLHAAGLFSAEQKRHKCKVSSI MLEMDRMLRPGGTVYIRDTISVMSELQEIATATRWVCTLRDTGEGPHASWKILTCDKRMP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77260			S-adenosyl-L-methionine-depend...		Potri.002G077100 [exp]	0	1
AT3G09090		DEX1	DEFECTIVE IN EXINE FORMATION 1...		Potri.006G096100 [exp]	1.00	0.9318	DEX1.1
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Potri.008G075300 [exp]	5.65	0.9022
AT5G53860		EMB64, EMB2737	EMBRYO DEFECTIVE 64, embryo de...		Potri.001G398900 [exp]	6.00	0.9056
AT2G16405			Transducin/WD40 repeat-like su...		Potri.004G160000 [exp]	8.30	0.9038
AT4G38270		GAUT3	galacturonosyltransferase 3 (....		Potri.004G206000 [exp]	8.83	0.8679
AT5G56510		APUM12	pumilio 12 (.1)		Potri.001G002600 [exp]	8.94	0.8863
AT1G05910			cell division cycle protein 48...		Potri.017G031400 [exp]	15.42	0.8877
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Potri.007G060800 [exp]	16.52	0.8813
AT4G31150			endonuclease V family protein ...		Potri.018G001000 [exp]	17.32	0.8756
AT5G26830			Threonyl-tRNA synthetase (.1)		Potri.010G096500 [exp]	19.20	0.8868	Pt-THRRS.2

Compare expression of checked genes

Potri.002G077100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.