Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21470 561 / 0 ATFMN/FHY riboflavin kinase/FMN hydrolase (.1) AT5G57440 130 / 1e-35 GPP2, GS1 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G25840 120 / 4e-31 GPP1 glycerol-3-phosphatase 1 (.1) AT1G56500 71 / 4e-13 haloacid dehalogenase-like hydrolase family protein (.1) AT4G11570 67 / 4e-12 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT2G38740 63 / 4e-11 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G39970 60 / 6e-10 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G48420 56 / 1e-08 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G10970 46 / 2e-05 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G183400 [exp] 664 / 0 AT4G21470 575 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.018G092500 [exp] 131 / 6e-36 AT5G57440 398 / 2e-142 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.003G086900 [exp] 76 / 2e-15 AT2G38740 359 / 6e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G104366 [exp] 77 / 3e-15 AT4G11570 494 / 9e-176 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.001G147300 [exp] 74 / 1e-14 AT2G38740 360 / 5e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.003G127100 [exp] 74 / 2e-14 AT4G11570 493 / 2e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.013G007800 [exp] 69 / 1e-12 AT1G56500 1489 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G147400 [exp] 64 / 1e-11 AT2G38740 350 / 2e-123 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.014G043500 [exp] 62 / 2e-10 AT2G38740 297 / 1e-101 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018435 [exp] 580 / 0 AT4G21470 553 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10028605 [exp] 570 / 0 AT4G21470 558 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10018906 [exp] 565 / 0 AT4G21470 556 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10025466 [exp] 134 / 7e-37 AT5G57440 357 / 1e-126 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10006954 [exp] 129 / 1e-34 AT5G57440 387 / 4e-137 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10002002 [exp] 77 / 3e-15 AT4G11570 491 / 9e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10035494 [exp] 77 / 4e-15 AT4G11570 493 / 2e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10020699 [exp] 74 / 8e-14 AT1G56500 1467 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10029840 [exp] 72 / 3e-13 AT1G56500 1528 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10013663 [exp] 70 / 4e-13 AT3G48420 427 / 4e-151 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01687 [poplar] [flax] Flavokinase Riboflavin kinase CL0137 [poplar] [flax] HAD PF13419 [poplar] [flax] HAD_2 Haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.002G077200.15 pacid=42778964 polypeptide=Potri.002G077200.15.p locus=Potri.002G077200 ID=Potri.002G077200.15.v4.1 annot-version=v4.1 ATGTCGATTGCAAAGCCTTTGAAGAAGTTAGTATCTGCTGTTATTCTTGATTTGGATGGTACCCTTCTTCATACAGATGGCATAGTGAGCGATGTTTTGA AAGTTTTCGTGGTCAAGTATGGAAAACAATGGGATGGGAGGGAAACTCAAAAAATAGTGGGAAAGACACCTTTGGAAGCTGCTGCTGCTGTGGTGGAAGA TTACGAGCTTCCTTGTTCAACTGATGATTTTCTGACTCAAATCACCCCATTGCTCTATGATCAGTGGTGCAGCATTAAGGCTCTTCCTGGTGCCAATCGG TTAATAAAACATTTGAGTAGTCATAATGTGCCTATGGCATTGGCTTCAAACTCTCCAAGGGCAAATATAGAATCCAAAATTTCTTACCATCAGGGCTGGA AGGGATCCTTTTCTGTCATCATTGCTGGTGATGAAGTGAGAACAGGAAAGCCATCTCCTGAAATATTTTTGGAAGCTGCTAAAAGGCTAAATGTCAAACC ATCCAGCTGCCTTGTGATTGAAGATTCTTTGCCAGGTGTTACTGGTGGTAAGGCCGCTGGCATGGAAGTAGTTGCTGTACCATCCATTCCAAAATCTCAT CTTTATACAGAAGCAGATGAAGTTATCAATTCTCTGCTTGATTTACAACCTGAATTGTGGGGCCTCCCTCCATTTGAAGATTGGATGGAGGGTACTTTGC CTATCGAACCTTGGCATATTGGCGGTCCTGTGGTCAAGGGATTTGGTCGTGGCTCAAAGGTTCTTGGAATCCCAACTGCTAATTTATCTACCAAAGGTTA TTCAGCACTTCTTTCAGAACATCCATCAGGTGTTTATTTTGGTTGGGCTGGATTATCATCGCAAGGTCTTTACAAAATGGTCATGAGTATTGGTTGGAAC CCATATTTTAACAACACCGAAAAGACTATAGAACCTTGGTTGCTTCATGAATTTGATGGGGATTTTTATGGTGAGGAATTGCGCCTTGTGGTAGTTGGCT ATATTCGACCAGAGGCCAATTTTTCATCGCTTGAGAGCTTGATAGCAAAGATTCATGAGGATAGAAGAATTGCAGAGAGAGCTCTAGACATTCCAACGTA CTCGAAATATAGGGATGACCCGTATTTGAAAGGCTCTTCCCTGTAA
AA sequence Show only first row Show all	>Potri.002G077200.15 pacid=42778964 polypeptide=Potri.002G077200.15.p locus=Potri.002G077200 ID=Potri.002G077200.15.v4.1 annot-version=v4.1 MSIAKPLKKLVSAVILDLDGTLLHTDGIVSDVLKVFVVKYGKQWDGRETQKIVGKTPLEAAAAVVEDYELPCSTDDFLTQITPLLYDQWCSIKALPGANR LIKHLSSHNVPMALASNSPRANIESKISYHQGWKGSFSVIIAGDEVRTGKPSPEIFLEAAKRLNVKPSSCLVIEDSLPGVTGGKAAGMEVVAVPSIPKSH LYTEADEVINSLLDLQPELWGLPPFEDWMEGTLPIEPWHIGGPVVKGFGRGSKVLGIPTANLSTKGYSALLSEHPSGVYFGWAGLSSQGLYKMVMSIGWN PYFNNTEKTIEPWLLHEFDGDFYGEELRLVVVGYIRPEANFSSLESLIAKIHEDRRIAERALDIPTYSKYRDDPYLKGSSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21470		ATFMN/FHY	riboflavin kinase/FMN hydrolas...		Potri.002G077200 [exp]	0	1
AT5G24810			ABC1 family protein (.1.2)		Potri.006G276600 [exp]	17.54	0.8896
AT1G03670			ankyrin repeat family protein ...		Potri.013G133800 [exp]	27.47	0.8792
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Potri.008G151500 [exp]	47.71	0.8733	LOX1.8
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Potri.010G246800 [exp]	53.24	0.8562
AT5G60160			Zn-dependent exopeptidases sup...		Potri.012G095200 [exp]	56.16	0.8347
AT4G19090			Protein of unknown function (D...		Potri.012G018500 [exp]	70.21	0.8668
AT3G50780			unknown protein		Potri.005G129700 [exp]	70.95	0.8456
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025100 [exp]	73.20	0.8618
AT5G66600			Protein of unknown function, D...		Potri.004G150000 [exp]	96.03	0.8353
AT3G01750			Ankyrin repeat family protein ...		Potri.001G335400 [exp]	105.98	0.8180

Compare expression of checked genes

Potri.002G077200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.