Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52560 1040 / 0 ATUSP UDP-sugar pyrophosphorylase (.1) AT2G35020 76 / 2e-14 GlcNAc1pUT2 N-acetylglucosamine-1-phosphate uridylyltransferase 2 (.1) AT1G31070 74 / 9e-14 GlcNAc1pUT1 N-acetylglucosamine-1-phosphate uridylyltransferase 1 (.1.2) AT3G56040 54 / 2e-07 UGP3 UDP-glucose pyrophosphorylase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G074700 [exp] 76 / 3e-14 AT2G35020 825 / 0.0 N-acetylglucosamine-1-phosphate uridylyltransferase 2 (.1) Potri.001G159700 [exp] 69 / 4e-12 AT2G35020 779 / 0.0 N-acetylglucosamine-1-phosphate uridylyltransferase 2 (.1) Potri.005G183200 [exp] 47 / 8e-07 AT5G52560 45 / 5e-07 UDP-sugar pyrophosphorylase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028658 [exp] 1095 / 0 AT5G52560 1030 / 0.0 UDP-sugar pyrophosphorylase (.1) Lus10000971 [exp] 1070 / 0 AT5G52560 1004 / 0.0 UDP-sugar pyrophosphorylase (.1) Lus10036227 [exp] 79 / 3e-15 AT1G31070 844 / 0.0 N-acetylglucosamine-1-phosphate uridylyltransferase 1 (.1.2) Lus10038366 [exp] 78 / 5e-15 AT1G31070 846 / 0.0 N-acetylglucosamine-1-phosphate uridylyltransferase 1 (.1.2) Lus10017443 [exp] 56 / 6e-08 AT3G56040 1100 / 0.0 UDP-glucose pyrophosphorylase 3 (.1) Lus10007512 [exp] 56 / 1e-07 AT3G56040 1101 / 0.0 UDP-glucose pyrophosphorylase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01704 [poplar] [flax] UDPGP UTP--glucose-1-phosphate uridylyltransferase
Representative CDS sequence Show only first row Show all	>Potri.002G077400.1 pacid=42778127 polypeptide=Potri.002G077400.1.p locus=Potri.002G077400 ID=Potri.002G077400.1.v4.1 annot-version=v4.1 ATGGAAGCAGCTGTAGCGACGGAATCTCTCTCGAAGCTTAATATCAATGGCGATTTTGCTTCCTCTCTTCCCAATCTCCACAAAAACCTTCACCTCCTCT CCCCTCAACAGGTTGAGTTGGCGAAGATGTTAGTGGAGAAAGGACAATCTCATTTGTTTGAGCATTGGCCAGAGCCCGGTGTTGATGATGACGAGAAGAA AGCGTTTTTTGATCAGGTGACTCGGCTCAATTCTAGCTATCCTGGAGGCTTGGGATCGTATATTAAGACTGCTAGAGAACTTTTAGCAGATTCTAGAGCA GGAAAGAACCCTTTTGATGGCTTTACACCTTCGGTTCCTACCGGTGAAAATCTGAGTTATGGTGATGAAAACTTTATCAAATTTGAAGAGGCAGGCGTAA AAGAAGCCCAGAATGCTGCATTTGTTCTTGTTGCTGGTGGGCTTGGTGAGCGTCTTGGATATAATGGAATAAAGGTGGCTCTTCCATTTGAGACCATAAC AGGAACATGCTTCTTACAGTGCTATATTGAATCTGTTCTGGCTCTTCAGGAAGCTAGCTATAGAATGACACAGGGTGGACAGAAAAAAGAGGTTCCTTTT GTTATCATGACATCAGATGATACACATTCACGCACAGTGGAGCTTTTAGAATCAAATTCTTATTTTGGAATGAAACCTACTCAAGTAAAACTTCTCAAGC AGGAAAAAGTTGCATGCTTAGAGGATAATGATGCCAGACTTGCTTTGGATCCGCAAAACAAATTTCGAGTTCAGACAAAACCTCATGGGCATGGTGATGT TCACTCACTTCTCTACTCAAGTGGCCTTCTTTATGAATGGCATGATGCTGGTTTGAGATGGGTTCTATTTTTCCAAGATACAAATGGACTTCTATTCAAG GCAATTCCAGCTTCAATTGGTGTCAGTGCCACCAAGGGATACCATGTTAACTCTCTTGCTGTCCCTCGCAAAGCTAAAGAAGCTATAGGAGGGATTACCA AGCTTACTCATATTGATGGAAGGTCCATGGTGATTAATGTGGAATACAATCAACTTGATCCTCTGCTTAGAGCAACTGGGTTTCCTGGTGGAGATGTCAA TTGCGAGACAGGCTATTCTCCTTTCCCAGGAAATATAAACCAATTGATTCTGGAGCTTGATTCTTATATTGAGGAGCTCAAAAAAACAGGAGGTGCAATA AAGGAGTTTGTTAACCCAAAATACAAAGATGCCAGCAAAACTTCATTTAAATCTTCAACTAGACTGGAATGCATGATGCAAGATTATCCAAAAACACTGC CTCCATCAGCAAGAGTTGGATTTACGGTGATGGATACATGGCTTGCTTATGCACCTGTGAAGAACAACCCTGAGGATGCTGCCAAGGTACCAAAGGGGAA TCCATATCACAGTGCAACTTCTGGAGAAATGGCCATTTATCGTGCAAACAGCCTCATACTTAGAAAGGTTGGTGTCCAAGTGGATAATCCAGTTAATGAG GTCTTCAATGGACAAGAGGTGGAAGTGTGGCCTCGCATTGTATGGAAGCCAACATGGGGATTGACATATGCAGATATCAGAAGTAAAGTTAGTGGAAGTT GCTCCATCACTCAAAGATCTACCATGGCTATTAAGGGTCGGAATATCTTTGTCAAAGATCTCTCCTTGGATGGGGCACTTGTGATTGACTCTATTGATGA AGCAGAGGTTAAAGCTGGAGGTTCAGTGCAGAACAAGGGCTGGCTCATGGAAAAAGTTGACTACAAAGATACTTCAGTACCTGAGGCAATACGGATCAGG GGCTTCAGATTCAAAAAGATTGAGCAGCTGGAAAAGCAATTCAGTGAGCCTGGAAAGTTCGAATTGAAGGCTTGA
AA sequence Show only first row Show all	>Potri.002G077400.1 pacid=42778127 polypeptide=Potri.002G077400.1.p locus=Potri.002G077400 ID=Potri.002G077400.1.v4.1 annot-version=v4.1 MEAAVATESLSKLNINGDFASSLPNLHKNLHLLSPQQVELAKMLVEKGQSHLFEHWPEPGVDDDEKKAFFDQVTRLNSSYPGGLGSYIKTARELLADSRA GKNPFDGFTPSVPTGENLSYGDENFIKFEEAGVKEAQNAAFVLVAGGLGERLGYNGIKVALPFETITGTCFLQCYIESVLALQEASYRMTQGGQKKEVPF VIMTSDDTHSRTVELLESNSYFGMKPTQVKLLKQEKVACLEDNDARLALDPQNKFRVQTKPHGHGDVHSLLYSSGLLYEWHDAGLRWVLFFQDTNGLLFK AIPASIGVSATKGYHVNSLAVPRKAKEAIGGITKLTHIDGRSMVINVEYNQLDPLLRATGFPGGDVNCETGYSPFPGNINQLILELDSYIEELKKTGGAI KEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSARVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYRANSLILRKVGVQVDNPVNE VFNGQEVEVWPRIVWKPTWGLTYADIRSKVSGSCSITQRSTMAIKGRNIFVKDLSLDGALVIDSIDEAEVKAGGSVQNKGWLMEKVDYKDTSVPEAIRIR GFRFKKIEQLEKQFSEPGKFELKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52560		ATUSP	UDP-sugar pyrophosphorylase (....		Potri.002G077400 [exp]	0	1
AT5G58290		RPT3	regulatory particle triple-A A...		Potri.006G031000 [exp]	2.82	0.8889	RPT1.3
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.005G146800 [exp]	10.24	0.8811
AT1G35620		ATPDI8, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.013G111400 [exp]	14.28	0.8622
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Potri.001G222200 [exp]	17.66	0.8826	Pt-ACCAL.3
AT5G40580		PBB2	20S proteasome beta subunit PB...		Potri.017G071100 [exp]	19.89	0.8629	PBB1.1
AT3G14290		PAE2	20S proteasome alpha subunit E...		Potri.001G162900 [exp]	20.49	0.8725	Pt-PAE1.1
AT5G48485		DIR1	DEFECTIVE IN INDUCED RESISTANC...		Potri.014G149900 [exp]	23.55	0.8035
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Potri.011G110900 [exp]	26.11	0.8550	Pt-GF14.3
AT1G45000			AAA-type ATPase family protein...		Potri.005G231700 [exp]	26.73	0.8743	RPT4.1
AT1G09150			pseudouridine synthase and arc...		Potri.005G023600 [exp]	31.62	0.8721

Compare expression of checked genes

Potri.002G077400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.