Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21560 98 / 7e-22 unknown protein AT1G77270 92 / 4e-19 unknown protein AT3G07730 90 / 1e-18 unknown protein AT4G01170 84 / 8e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029729 [exp] 87 / 3e-17 AT1G77270 73 / 4e-13 unknown protein Lus10042760 [exp] 53 / 5e-08 AT1G77270 55 / 2e-09 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G077500.1 pacid=42779395 polypeptide=Potri.002G077500.1.p locus=Potri.002G077500 ID=Potri.002G077500.1.v4.1 annot-version=v4.1 ATGGGGTCTACCGAAACTGTTGTTGTTCAAAGTGAAGGGTTTGATTTTATGCATGATGAGAGGTTGGATCGGAGGTTGAAGAGAAGGAATATTGGCACTC GACGATTCAAGGTCAATTCTAATGGAAAAACCGACAGCTGTAAAGACATTACAGCTCTGAAGAGTAGCTCTGAAATTTTTTGTGCTCAGAAGGATGGCCA TGACAGCGATGTTGGTGATGAAGATTACAGGAAGTATCATGATGGTTCAGTTAGAGGGCCGTTTATTGATAGTGATGCTCATCTTGACACGAAGTCTTCT TCATCCAAGAAAAATAACGAAAGATACAGTGGTATTAAATATACCGTGTCTCCAATGAATGCACCCACCAGCAGCAGCTGTATTCTACTTGATGATGATG ATGATTATGAGGTTGATGAACATTACAAGAAGTTTTTAAAGGACTTAGATGGAGGGCTGTATGTTGATAGTGACTGTGATGCTTGTGTGGATATCAAGTC TTCATCCACGAGAAATGTCAGGTCAACTGATAATGGTAATGCTGTTGACCTTGTTAATCGGTTTGTGGAGAATAGTGTTGGCATTAATGGGGCTTTGGAT GGTGGTAATGCGGATACTAGTTTTGTTGATGATGATACTGCTCCTATGCCTCTGCCTGATGGCATTGCTAGTGTTGGGACAGTTGATGTTGGTCTAGATG GTGCTAGGGCTGGAGATAATGATATCGTTGATGGTGGGCATCTCAATAATGGCATTGTTGGTGAAGATGAAGGAGATGATGGTAATAATAAAGATGATGG TTTTGTAGGTGATGGTGCCGACACTAATGAGGATCCTGACTATAAGATGTTCTTGGATAATCTTAGACAGGATGGGAAATCATGCATTCTTGAGATTCCG CTGACTAATGAGATATCAATAACTGTTAGGTATGACTTACAAGATGGCGCATATGATGGGTGTAACATTGAGAAACCAAACACTCAGAAGGACTGTCCAA AGAGAAAGAACAAAGGAACCACGGAATTGTTGAAGAATGATTCGAGAATTGAGAGAATGAAAACGAGGAGTGTTACGAGGAAAGAGAGAGCGGCAGCTTC GAGAAAATTGAGGGGTGTTCCAGCAAGAGCAATGAAGATTTCAGTGGTTGAAAGCAAGAAGAAAACAAAATATATGAATCCTATTTCTTGTAGAGCAGAT GGACATGCTGGCAAAAGGCCTAATTCAGAATCTCTTGGTCCAACTAATTGCAAGAGCAAACATGAAATGAAATTGGATATGAACCAGAGAATATTGAGGG ATGTCCCAGCCCGAGAAAGAAAGGTTTCAGCTGTTGAAAGGAATTTGAACGTGGAAACTGTGGATCTTACAAATGAAGGCGCAAGTAAAAGGCCTAGTCC AGAAGCTCTTAGTTTGACTAATTTCGAGCGCAAACACAAGGTGAAAATGACAATGGTGAATCATATAACAGAGAATCAAAGAAAATCCAGGGCTGCTCCA TCCAGAGAGAGAAAGATTTCAGCAGTTGAAAGTAAGGTGAGAGAGGAACCTTCGAATCTTGTTTCTTGCAGAGAAAATGTAATTGCAAGGAAAAGACCTA GTCAACAAGCTATTGGTATGAATAATTGCAAGCGCAAACATATGCATCTGGATATGGAGAATTGTAGGATGGAAACTCAACAAAATATAAAGGATGTTCC AGCCAAAGAAAGGGGAAATTCGGCAGTTGAAAGGACGTTTGAAAAGCAGTCCCCGAATACAGTCCCACATGGAGCTGATGGGCATGCAAGTAAAAAGCCT AGTCCACAAGCCCCTAGCTCCACAAATTGCAAAAACAAATGTGAGATGAATCTGGATATGGTGGATCATAGCTACCAAAGTTTTTTGAATTCACTTAAAA AAAATGGTAGATATGCAGTATTTGCTCCTCAAAGTGGAAAAGGAGTTTTGTTTGGAGAGGATGAACAGGGTTCCTCTGATTCTGAGGTGATTGTCATGGA CAAGGATCAATTTCTTGATGGAAATGATACTCCATTTGTGAGTTCAAAAGCATACATTGTAGAGGATGAAGGTTGGATGGACAACGGAGTTTCCAGTAAA TTTAGAGAGGAACTTTTGAAAATCCTTGAAAAACCTTATGATGAAAGGGAGTTTGAAGACCTGTGGCAAAGAATATCTCACCGAAGTCATGTGAACCGTG ATATAAACTTGCGGAGTGGGTGTATAAGATTTGAAACAAAAGCTATTGGAAAATCTTATCTTGACCATCATGCAGATCTTGAAGCAAAGATCCGATCAGC TCAGGGTAATCAGCCAGAAATTTTGAATCTCATGCGTGGTTTTTTCTATTGGTTGATGAATGCATCGCATGCTGGATCTCGAGCACTTCGACCTTGGCTG GACTCTTTATGTTTGAAAGTGCGGCCACAACATAAGAAGGAGATAGATGTCTTATGA
AA sequence Show only first row Show all	>Potri.002G077500.1 pacid=42779395 polypeptide=Potri.002G077500.1.p locus=Potri.002G077500 ID=Potri.002G077500.1.v4.1 annot-version=v4.1 MGSTETVVVQSEGFDFMHDERLDRRLKRRNIGTRRFKVNSNGKTDSCKDITALKSSSEIFCAQKDGHDSDVGDEDYRKYHDGSVRGPFIDSDAHLDTKSS SSKKNNERYSGIKYTVSPMNAPTSSSCILLDDDDDYEVDEHYKKFLKDLDGGLYVDSDCDACVDIKSSSTRNVRSTDNGNAVDLVNRFVENSVGINGALD GGNADTSFVDDDTAPMPLPDGIASVGTVDVGLDGARAGDNDIVDGGHLNNGIVGEDEGDDGNNKDDGFVGDGADTNEDPDYKMFLDNLRQDGKSCILEIP LTNEISITVRYDLQDGAYDGCNIEKPNTQKDCPKRKNKGTTELLKNDSRIERMKTRSVTRKERAAASRKLRGVPARAMKISVVESKKKTKYMNPISCRAD GHAGKRPNSESLGPTNCKSKHEMKLDMNQRILRDVPARERKVSAVERNLNVETVDLTNEGASKRPSPEALSLTNFERKHKVKMTMVNHITENQRKSRAAP SRERKISAVESKVREEPSNLVSCRENVIARKRPSQQAIGMNNCKRKHMHLDMENCRMETQQNIKDVPAKERGNSAVERTFEKQSPNTVPHGADGHASKKP SPQAPSSTNCKNKCEMNLDMVDHSYQSFLNSLKKNGRYAVFAPQSGKGVLFGEDEQGSSDSEVIVMDKDQFLDGNDTPFVSSKAYIVEDEGWMDNGVSSK FREELLKILEKPYDEREFEDLWQRISHRSHVNRDINLRSGCIRFETKAIGKSYLDHHADLEAKIRSAQGNQPEILNLMRGFFYWLMNASHAGSRALRPWL DSLCLKVRPQHKKEIDVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21560			unknown protein		Potri.002G077500 [exp]	0	1
AT3G06270			Protein phosphatase 2C family ...		Potri.010G028300 [exp]	7.07	0.7982
AT2G46200			unknown protein		Potri.014G091400 [exp]	8.00	0.8108
AT2G46900			unknown protein		Potri.002G183500 [exp]	9.38	0.7906
AT2G34040			Apoptosis inhibitory protein 5...		Potri.004G052300 [exp]	12.24	0.7943
AT4G00335		RHB1A	RING-H2 finger B1A (.1.2.3)		Potri.002G161500 [exp]	20.00	0.7660
AT3G14010		CID4	CTC-interacting domain 4 (.1.2...		Potri.001G171100 [exp]	22.91	0.7899
AT4G38380			MATE efflux family protein (.1...		Potri.009G143400 [exp]	22.91	0.7527
AT5G41770			crooked neck protein, putative...		Potri.003G137200 [exp]	23.66	0.7668
AT5G02570			Histone superfamily protein (....		Potri.004G091200 [exp]	29.56	0.7404
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Potri.008G105200 [exp]	30.82	0.7713	Pt-PHYB.1

Compare expression of checked genes

Potri.002G077500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.