Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37925 198 / 9e-65 NdhM, NDH-M NADH dehydrogenase-like complex M, subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G183000 [exp] 248 / 1e-84 AT4G37925 244 / 2e-82 NADH dehydrogenase-like complex M, subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029728 [exp] 195 / 2e-63 AT4G37925 244 / 1e-82 NADH dehydrogenase-like complex M, subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (.1) Lus10042758 [exp] 180 / 6e-57 AT4G37925 173 / 1e-53 NADH dehydrogenase-like complex M, subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (.1) Lus10029727 [exp] 170 / 2e-54 AT4G37925 172 / 6e-55 NADH dehydrogenase-like complex M, subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (.1) Lus10042759 [exp] 161 / 2e-51 AT4G37925 207 / 3e-69 NADH dehydrogenase-like complex M, subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10664 [poplar] [flax] NdhM Cyanobacterial and plastid NDH-1 subunit M
Representative CDS sequence Show only first row Show all	>Potri.002G077600.1 pacid=42777975 polypeptide=Potri.002G077600.1.p locus=Potri.002G077600 ID=Potri.002G077600.1.v4.1 annot-version=v4.1 ATGCTACAGCGCATTAGATTTTTAGCAATGGCAGCAACTTCCTCTTACCTAGCTGGTGCAAAGTTCTCTATGCTGGGTTGGCTTGGAGGCAGAAGAGAAC TGAGAAGGAGACACATAATCTCTGTTTCAGCTCAGCAGCAAGCTGAAGTCCAAGGATCACAGGAAGTGGATGCACAAGAAGAAAAAGAGCTAGAACAGGA GAAAGTGAAGCAACCAACGCAACCAAGACCAGTGGAACCACAAGTGAACGTGAAGAGCAAGAACATGAGCAGGGAATATGGAGGGCAGTGGCTCAGCAGC GTCACACGGCACGTGAGAATCTATGCTGCCTACATTGACCCAGAAACTTGTGAGTTCGATCAAACTCGGATGGATAAGCTCACCCTTATCCTTGATCCTA CAGATGAGTTCGTTTGGACAGAAGAGAGTTGCCATAAGGTTTACTCCTACTTCCAGGAGCTTGTGGATCACTACGAGGGTGCCCTGTTGACAGAATACAC ACTGCGACTGATTGGTTCGGATATAGAGCACTACATTAAGGAAGCTGCTGTATGA
AA sequence Show only first row Show all	>Potri.002G077600.1 pacid=42777975 polypeptide=Potri.002G077600.1.p locus=Potri.002G077600 ID=Potri.002G077600.1.v4.1 annot-version=v4.1 MLQRIRFLAMAATSSYLAGAKFSMLGWLGGRRELRRRHIISVSAQQQAEVQGSQEVDAQEEKELEQEKVKQPTQPRPVEPQVNVKSKNMSREYGGQWLSS VTRHVRIYAAYIDPETCEFDQTRMDKLTLILDPTDEFVWTEESCHKVYSYFQELVDHYEGALLTEYTLRLIGSDIEHYIKEAAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Potri.002G077600 [exp]	0	1
AT4G26555			FKBP-like peptidyl-prolyl cis-...		Potri.001G467100 [exp]	1.00	0.9531
AT2G44920			Tetratricopeptide repeat (TPR)...		Potri.010G200000 [exp]	2.44	0.9522
AT4G13590			Uncharacterized protein family...		Potri.001G053600 [exp]	4.00	0.9314
AT5G38260			Protein kinase superfamily pro...		Potri.004G076100 [exp]	5.19	0.9033
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Potri.017G072800 [exp]	5.65	0.9381
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.006G258550 [exp]	8.36	0.9292
AT2G33800		EMB3113	EMBRYO DEFECTIVE 3113, Ribosom...		Potri.011G053900 [exp]	9.74	0.9092
AT4G24750			Rhodanese/Cell cycle control p...		Potri.015G086100 [exp]	9.79	0.9066
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.005G155000 [exp]	11.22	0.9296
AT3G56650			Mog1/PsbP/DUF1795-like photosy...		Potri.006G034300 [exp]	11.74	0.9410

Compare expression of checked genes

Potri.002G077600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.