Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77280 797 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G21590 667 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G63940 486 / 3e-162 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G35030 340 / 2e-109 Protein kinase superfamily protein (.1.2.3) AT2G16750 329 / 7e-103 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G18890 251 / 3e-76 Protein kinase superfamily protein (.1.2) AT5G65530 253 / 4e-76 Protein kinase superfamily protein (.1) AT1G66460 249 / 1e-74 Protein kinase superfamily protein (.1) AT5G10520 248 / 6e-74 RBK1 ROP binding protein kinases 1 (.1) AT5G18910 248 / 1e-73 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G182800 [exp] 1156 / 0 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G102400 [exp] 705 / 0 AT5G63940 722 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G067000 [exp] 548 / 0 AT5G63940 690 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G175100 [exp] 374 / 3e-119 AT2G16750 564 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.009G134700 [exp] 361 / 3e-114 AT2G16750 555 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G019300 [exp] 342 / 6e-106 AT4G35030 387 / 7e-127 Protein kinase superfamily protein (.1.2.3) Potri.018G096100 [exp] 273 / 6e-82 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.006G173700 [exp] 269 / 3e-80 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2) Potri.013G028100 [exp] 265 / 3e-80 AT3G05140 548 / 0.0 ROP binding protein kinases 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028661 [exp] 858 / 0 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10000968 [exp] 853 / 0 AT1G77280 844 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024154 [exp] 464 / 7e-154 AT1G77280 668 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10039518 [exp] 461 / 4e-153 AT1G77280 610 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10014122 [exp] 333 / 6e-104 AT2G16750 507 / 4e-173 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10019787 [exp] 331 / 5e-103 AT2G16750 513 / 4e-175 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10017273 [exp] 306 / 2e-94 AT4G35030 325 / 2e-105 Protein kinase superfamily protein (.1.2.3) Lus10013566 [exp] 303 / 3e-94 AT4G35030 327 / 3e-107 Protein kinase superfamily protein (.1.2.3) Lus10035949 [exp] 265 / 6e-80 AT5G65530 521 / 0.0 Protein kinase superfamily protein (.1) Lus10006148 [exp] 258 / 2e-75 AT3G13690 1084 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0039 [poplar] [flax] HUP PF00582 [poplar] [flax] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Potri.002G077900.4 pacid=42779844 polypeptide=Potri.002G077900.4.p locus=Potri.002G077900 ID=Potri.002G077900.4.v4.1 annot-version=v4.1 ATGAAGAAAATGCTGCACCGTGAAGGAGAGGAAATGACAGACTCCGGTGACAGTACGGTGATTGTAGGAGTCAAGCTTGACTCAATGAGTAGAGAGTTGT TGACTTGGGCTTTAGTCAAAGTGGCTCAACCTGGAGATACTGTTATTGCTCTTCATGTTCTAGGTAGTAATGAAATTGTGGACCGTGAAGGGAAATCTTC GCTTCTCTCGCTTGTTAAAGCCTTTGACTCTGTTCTTGCTGTTTATGAAGGTTTCTGTAACTTGAAACAGGTGGATCTCAAGCTCAAGATATGCAGAGGT TCTTCAACTCGAAAAATTTTAGTCAGGGAAGTAAAATCTTATGCAGCAACGAAGGTTATAGTTGGAGCTGCCAAGAATCATCCTTCAATTTGGTCATCAA CATCTGTGGCCAAGTATTGTGCTAAAAAGCTACCAAAGGATTGTTCTGTTCTTGCTGTCAATAATGGGAAAGTTGTTTTTCAAAGGGAGCGCTCTCCAAA TACTAGTGTAGTAAACAATTATGTAATTGTTACAGGAACAAAAGATCATAGTAAGAGTTTGCTTAGTGTCGTTCACCGTACGATTTCCTCTGAGAAGAAA TCCAGAGAATTGAATGAAAGTAGTGCCAATGGGGGCTCTAAGGATGATCAGGATAGTGACCAGATTTTGGAGAAGGCCTTAATGAAAGCTCGTTCGAATA GTCTGGAAAGTATCATGAAAGAGAATTGCTCAGTTTGTGGGTCGGCTACGATATTTGCTGATGATTCCAGTAATGAATCTGCAGAAGCATCTTCCAGTGA TAATGGAGGTGATGACAAGTCTTTAGCTCTAGTTCCGGTACCAAGGCTAGAGGAACCCACGAGTTCAGTTTCCACATTAATTAGACAAGTGCCTGAATTA AAACCTGGTTGGCCACTGCTCTGTCGTGCAGTTTTACCAGATAAAAAAGAATCAAACATATCCTTGGTAAGGCAGGTCTGTGTGGTTCAGTGGGAGCAAC TCTCATTATCCACTGTCAATTCCGATCATAAACAGGATGGTTCTGATAAGGGTGAAGATAAATTCAATTTAGATGGAGAAAGTGGTGCAATTGTTGCAGT TGGAATGGAGACAGCGACAGCCCCGCATACTCCTCACCACAATTCAAGAAGTCCACCAAAAGAATTGGAGGGTCTTCATGAGAAATACTCAGCAACTTGC AGATTGTTTCAGTACCAAGAACTTCTCTCAGCTACATCCAATTTCTTGGCTGAAAATTTGATTGGTAAAGGGGGCAGCAGTCAGGTTTATAAAGGTTGCC TTTCTGATGGCAAGGAACTTGCTGTGAAAATCTTAAAGCCATCTGAAGATGTGTTGAAGGAGTTTGTTCTGGAAATTGAGATCATCACTACCTTGCATCA TAAGAACATCATTTCTCTCTTGGGGTTCTGTTTTGAGGACAAAAATCTTCTCTTAGTTTACGATTTCCTACCAAGAGGAAGTCTTGAAGACAACCTTTAT GGTAATAAGAAGGACCCACTTACATTTGGTTGGAATGAAAGATATAAGGTGGCTTTAGGAGTCGCAGAGGCCTTGGATTATCTTCATAGCTGCAGTGCTC AACCTGTGATCCACAGAGATGTTAAATCATCAAATATACTATTATCTGATGATTTTGAGCCACAGCTCTCTGATTTTGGACTTGCTAAATGGGCACCAAC CTCTTCGTCTCATATAATCTGCACTGATGTTGCTGGAACTTTTGGTTACTTGGCTCCTGAATACTTCATGTATGGCAAGGTTAACAAGAAGATTGATGTT TATGCATTTGGTGTTGTACTCCTTGAGCTTCTTTCGGGGAAAAAGCCAATAAGCAATGATCTTCCAAAGGGCCAAGAGAGCCTAGTTATGTGGGCAAAAC CGATCCTAAACGGTGGAAAGGTTTCCCAATTGTTAGACTCAAGCTTGGGTGATAGCTATGATCTTGATCAGATGGAGAGGATGGTTTTAGCTGCCAATCT GTGTGTAAAACGTGCCCCCCGAGCTAGGCCTCAAATGAGCCTTGTTGTGAAGCTCCTCCAAGGTGACGCGGAAGCGACCAAGTGGGCAAGGTTGCAAGTT AACGCTGCAGAAGAATCTGACGTGTTGGATGATGAAGCATGTCCGCGTTCTAATCTCCTGTCCCACCTTAACCTTGCATTGCTTGATGTTGAGGATGATT TGCTCTCCTTGAGCAGCATTGAGCACAGTATATCATTGGAGGATTACTTGGCAGGTGGAGCCGCTCATCAAGCTTAG
AA sequence Show only first row Show all	>Potri.002G077900.4 pacid=42779844 polypeptide=Potri.002G077900.4.p locus=Potri.002G077900 ID=Potri.002G077900.4.v4.1 annot-version=v4.1 MKKMLHREGEEMTDSGDSTVIVGVKLDSMSRELLTWALVKVAQPGDTVIALHVLGSNEIVDREGKSSLLSLVKAFDSVLAVYEGFCNLKQVDLKLKICRG SSTRKILVREVKSYAATKVIVGAAKNHPSIWSSTSVAKYCAKKLPKDCSVLAVNNGKVVFQRERSPNTSVVNNYVIVTGTKDHSKSLLSVVHRTISSEKK SRELNESSANGGSKDDQDSDQILEKALMKARSNSLESIMKENCSVCGSATIFADDSSNESAEASSSDNGGDDKSLALVPVPRLEEPTSSVSTLIRQVPEL KPGWPLLCRAVLPDKKESNISLVRQVCVVQWEQLSLSTVNSDHKQDGSDKGEDKFNLDGESGAIVAVGMETATAPHTPHHNSRSPPKELEGLHEKYSATC RLFQYQELLSATSNFLAENLIGKGGSSQVYKGCLSDGKELAVKILKPSEDVLKEFVLEIEIITTLHHKNIISLLGFCFEDKNLLLVYDFLPRGSLEDNLY GNKKDPLTFGWNERYKVALGVAEALDYLHSCSAQPVIHRDVKSSNILLSDDFEPQLSDFGLAKWAPTSSSHIICTDVAGTFGYLAPEYFMYGKVNKKIDV YAFGVVLLELLSGKKPISNDLPKGQESLVMWAKPILNGGKVSQLLDSSLGDSYDLDQMERMVLAANLCVKRAPRARPQMSLVVKLLQGDAEATKWARLQV NAAEESDVLDDEACPRSNLLSHLNLALLDVEDDLLSLSSIEHSISLEDYLAGGAAHQA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77280			Protein kinase protein with ad...		Potri.002G077900 [exp]	0	1
AT1G08760			Plant protein of unknown funct...		Potri.017G026200 [exp]	8.36	0.8257
AT1G12430		AtKINUa, ARK3, ...	phosphatidic acid kinase, Arab...		Potri.003G117000 [exp]	9.21	0.8052	Pt-PAK.1
AT5G17600			RING/U-box superfamily protein...		Potri.010G206200 [exp]	12.40	0.7720
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Potri.008G034800 [exp]	13.11	0.8146
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.012G006400 [exp]	14.07	0.8292	OMT1.1
AT1G11190		ENDO1, BFN1	ENDONUCLEASE 1, bifunctional n...		Potri.011G044500 [exp]	18.70	0.7927	BFN1.1
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Potri.001G036900 [exp]	20.27	0.8197	Pt-4CL.3,Ptr4CL3
AT3G61660			unknown protein		Potri.014G095600 [exp]	24.45	0.7725
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Potri.019G130700 [exp]	26.05	0.8004	C4H1,Pt-CYP73.3
AT1G02630			Nucleoside transporter family ...		Potri.018G130200 [exp]	32.15	0.7364

Compare expression of checked genes

Potri.002G077900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.