Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21650 1753 / 0 SECA2 Preprotein translocase SecA family protein (.1.2.3) AT4G01800 700 / 0 AtcpSecA, AGY1, SECA1 Arabidopsis thaliana chloroplast SecA, Albino or Glassy Yellow 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G112266 [exp] 697 / 0 AT4G01800 1707 / 0.0 Arabidopsis thaliana chloroplast SecA, Albino or Glassy Yellow 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029715 [exp] 1768 / 0 AT1G21650 1660 / 0.0 Preprotein translocase SecA family protein (.1.2.3) Lus10042747 [exp] 1674 / 0 AT1G21650 1587 / 0.0 Preprotein translocase SecA family protein (.1.2.3) Lus10009973 [exp] 617 / 0 AT4G01800 1589 / 0.0 Arabidopsis thaliana chloroplast SecA, Albino or Glassy Yellow 1 (.1.2) Lus10038031 [exp] 588 / 0 AT4G01800 1517 / 0.0 Arabidopsis thaliana chloroplast SecA, Albino or Glassy Yellow 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01043 [poplar] [flax] SecA_PP_bind SecA preprotein cross-linking domain PF07516 [poplar] [flax] SecA_SW SecA Wing and Scaffold domain CL0023 [poplar] [flax] P-loop_NTPase PF07517 [poplar] [flax] SecA_DEAD SecA DEAD-like domain
Representative CDS sequence Show only first row Show all	>Potri.002G078000.6 pacid=42776755 polypeptide=Potri.002G078000.6.p locus=Potri.002G078000 ID=Potri.002G078000.6.v4.1 annot-version=v4.1 ATGGCCACCGTTCCCGCTCTCTTAAACCCTCCATTTCTCCCATCTAAACCACCTAACCAACAAACGGCTCTCTACTACACCAAACCCATCCTCACTCTTC CTTTCTCCTTAACCCACTCTTTTCCAAGGCTTCATAGGCGTCTTGTTATCCGCAGTAGCACTGCTATTCATGTTTCTCTCAAGGAGAATTTGGGCAGTTT GAAGAAGAGAGTGACTGATTTTACGAGCTTGAACTACTGGATTGTGAAGGATTATTATCGTTTAGTGGAGTCTGTCAATGCTCTTGAGTCTAAGATACAA AAGCTCTCTGATGATCAGTTGAGTGCTAAAACTGTGGAGTTTAGGAGAAGGTTGCGACAAGGGGAGACACTAGCAGATATTCAAGCTGAGGCCTTTGCTG TGGTTCGTGAAGCTGCAACGAGGAAACTTGGGATGCGCCATTTTGACGTGCAGATTATTGGTGGTGCAGTGCTTCATGATGGATCAATTGCTGAGATGAA AACAGGGGAAGGGAAAACATTGGTTTCCACACTAGCAGCATATCTCAATGCATTGACTGGCGAGGGTGTTCATGTGGTAACTGTGAATGATTATCTGGCT CAACGTGATGCTGAGTGGATGGGTCGTGTTCATCGTTTCTTGGGCCTTTCAGTTGGTCTTATTCAGAAGGGGATGGCATCTAAAGAGAGGAGGTCCAATT ACAGGTGTGATATAACTTACACCAACAATTCAGAACTTGGTTTTGATTATCTACGAGATAACCTTGCGGGAAACAGTGAACAACTTGTGATGAGATGGCC AAAGCCATTTCATTTTGCAATAGTTGATGAAGTTGATTCAGTCCTCATTGATGAAGGAAGAAATCCATTGTTAATAAGTGGTGAGGCTAATAAGGATGCT GCACGATATCCAGTTGCTGCTAAAGTAGCCGAGTTACTTATTCGAGGCATCCATTACTCTGTGGAGCTTAAAGACAATTCAGTGGAGTTGACAGAGGAAG GAATATTACTTGCTGAGATGGCTCTTGAAACAAAAGATCTGTGGGATGAGAATGATCCCTGGGCTAGATTTGTGATGAATGCTTTAAAGGCTAAAGAGTT CTATCGACGGGATGTTCAATATATTGTTAGGAACGGGAAGGCTCTCATAATCAATGAGTTGACAGGAAGAGTTGAAGAGAAAAGGAGATGGTCTGAAGGT ATTCACCAGGCTGTTGAGGCTAAGGAAGGTCTGAAGATCCAGGCTGATTCAGTTGTTGTTGCACAAATCACATATCAATCACTGTTTAAGCTCTACCCAA AGCTGTCAGGAATGACCGGGACTGCAAAAACTGAAGAGAAGGAGTTTTTGAAAATGTTCCAGGTGCCAGTTATTGAAGTGCCAACAAACCTACCAAATAT CCGTAAAGATTTACCCATACAAGCTTTTGCGTCTGCTCGCGGGAAATGGGAGTATGTTCGGCAAGAAGTCGAGTATATGTTCAAGCAGGGCCGTCCTGTT TTAGTTGGAACCACTAGTGTTGAGAATTCTGAATATCTGTCTGATTTGCTTAAGGAATGGAGAATCCCCCACAATGTTCTGAACGCTCGACCAAAGTATG CCACAAGGGAAGCTGAAATTGTTGCCCAAGCAGGACGAAAACATGCCATAACCATTTCTACAAATATGGCTGGCAGAGGCACTGATATAATTCTGGGAGG AAATCCAAAAATGCTTGCAAAAGAAATTATAGAGAACAGGGTGCTCCCTTTTCTTACACAAGAAGCTCTTAATGCAGAAATCGACCACGAGATATTTTCA CAAAAGGTATTGTCAGAGATAAAGGTTGGATCAATATCATCTGCTCTGCTAGCAAAGACAGCACTAATGGCCAAGTATGTCGGAAAAGGTGAGGGTAAGA GCTGGACGTATCAGGAGGCGAAATTGATTGTATCAGACTCTGTGGAAATGAGCCATTCAATGGATGCAAAAGAGCTCCAGCAGCTTGCTAATGAGCAGTC TGAGATGTACCCTCTTGGCCCAACTATATCACTTGCCTATCTGTCAGTGCTGAAGGATTGTGAAGTACACTGCTTCAATGAAGGGTCTGAGGTGAAAAGG CTTGGGGGCCTCCATGTGATTGGAACATCTTTGCACGAGTCTCGGAGAATTGATAATCAGCTTCGTGGAAGAGCAGGAAGGCAAGGGGATCCTGGTTCTA CCCGGTTTATGGTCAGCTTGCAGGATGAAATGTTTCAAAAATTTAATTTTGATACAGAGTGGGCTGTGAGACTTATCTCAAAGATTACTAATGATGAGAC TATACCGATTGAAGGTGATGCAATTGTAAATCAGCTTTTATCCCTGCAAATCAATGCGGAGAAGTACTTCTTTGGCATAAGAAAGAGCCTAGTTGAGTTT GATGAAGTATTAGAGGTACAAAGGAAACATGTTTATGATCTTAGGCAATTGATTTTAACCGGAGACAATGAAAGTTGTTCTCAACATGTATTCCAGTACA TGCAAGCTGTGGTGGATGAAATTGTCTTTGGCAATGCTGATCCGCTGAAGCATCCAAGAAGCTGGAATCTGAGTAAGCTCTTAAAGGAGTTTATAACTAT TGGGGGAAAGCTACTGCATGAACCATTTGTAGGCATCAGCGAGGAAGCCTTTCTGAAATCTCTCTTACAACTACACGAATCAAGTTCTATTAATATCAGC AATTTTCACCTTCCAAACTTGCCGAAGCCTCCAAATGCTTTCAGAGGAATCCGCAGGAAGAGTTCTTCATTAAAACGATGGCTTGCTATTTGTTCTGATG ATTTGACTAAGAATGGGAGCTACCAGACAACAACCAATCTTCTTCGCAAATACCTTGGAGATTTTTTAATCGCTTCATATTTGGATGTTATACTAGAATC TGGTTATGATGATGCATATATCAAAGAAATTGAGAGAACAGTTCTTCTGAAGACTCTAGACTATTTCTGGCGGGATCATCTTGTAAACATGAATAGGCTC AGCTCAGCGGTGAATGTAAGAAGTTTTGGGCACAGGAATCCTCTCGAAGAATACAAAATTGATGGTTGTCGGTTTTTCATCTCAATGCTGAGTGCAACTC GGAGATTAACTGTTGAAACACTTCTGCAGTATTGGTCATCTCCTACAGAATCTCAAGAACTCTTTGTATCATAA
AA sequence Show only first row Show all	>Potri.002G078000.6 pacid=42776755 polypeptide=Potri.002G078000.6.p locus=Potri.002G078000 ID=Potri.002G078000.6.v4.1 annot-version=v4.1 MATVPALLNPPFLPSKPPNQQTALYYTKPILTLPFSLTHSFPRLHRRLVIRSSTAIHVSLKENLGSLKKRVTDFTSLNYWIVKDYYRLVESVNALESKIQ KLSDDQLSAKTVEFRRRLRQGETLADIQAEAFAVVREAATRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLA QRDAEWMGRVHRFLGLSVGLIQKGMASKERRSNYRCDITYTNNSELGFDYLRDNLAGNSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEANKDA ARYPVAAKVAELLIRGIHYSVELKDNSVELTEEGILLAEMALETKDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEG IHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQVPVIEVPTNLPNIRKDLPIQAFASARGKWEYVRQEVEYMFKQGRPV LVGTTSVENSEYLSDLLKEWRIPHNVLNARPKYATREAEIVAQAGRKHAITISTNMAGRGTDIILGGNPKMLAKEIIENRVLPFLTQEALNAEIDHEIFS QKVLSEIKVGSISSALLAKTALMAKYVGKGEGKSWTYQEAKLIVSDSVEMSHSMDAKELQQLANEQSEMYPLGPTISLAYLSVLKDCEVHCFNEGSEVKR LGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVRLISKITNDETIPIEGDAIVNQLLSLQINAEKYFFGIRKSLVEF DEVLEVQRKHVYDLRQLILTGDNESCSQHVFQYMQAVVDEIVFGNADPLKHPRSWNLSKLLKEFITIGGKLLHEPFVGISEEAFLKSLLQLHESSSINIS NFHLPNLPKPPNAFRGIRRKSSSLKRWLAICSDDLTKNGSYQTTTNLLRKYLGDFLIASYLDVILESGYDDAYIKEIERTVLLKTLDYFWRDHLVNMNRL SSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVETLLQYWSSPTESQELFVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21650		SECA2	Preprotein translocase SecA fa...		Potri.002G078000 [exp]	0	1
AT5G65685			UDP-Glycosyltransferase superf...		Potri.007G009600 [exp]	1.00	0.9301
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Potri.017G043100 [exp]	4.24	0.9118
AT5G62620			Galactosyltransferase family p...		Potri.012G072400 [exp]	6.00	0.8930
AT1G73210			Protein of unknown function (D...		Potri.004G068700 [exp]	9.89	0.8631
AT1G28320		DEG15	protease-related (.1)		Potri.011G056100 [exp]	10.95	0.8835
AT5G49580			Chaperone DnaJ-domain superfam...		Potri.010G148900 [exp]	11.31	0.8781
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Potri.003G064100 [exp]	12.36	0.8597
AT1G45110			Tetrapyrrole (Corrin/Porphyrin...		Potri.005G232200 [exp]	12.72	0.8593
AT3G19740			P-loop containing nucleoside t...		Potri.005G093300 [exp]	13.96	0.8609
AT1G75010		ARC3	ACCUMULATION AND REPLICATION O...		Potri.010G099300 [exp]	14.66	0.8391

Compare expression of checked genes

Potri.002G078000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.