Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77310 417 / 4e-135 unknown protein AT1G21610 359 / 1e-113 wound-responsive family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G182300 [exp] 1131 / 0 AT1G21610 449 / 3e-148 wound-responsive family protein (.1.2.3) Potri.005G067800 [exp] 417 / 4e-135 AT1G77310 321 / 5e-99 unknown protein Potri.007G101201 [exp] 374 / 9e-119 AT1G21610 286 / 2e-86 wound-responsive family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028676 [exp] 656 / 0 AT1G21610 486 / 3e-163 wound-responsive family protein (.1.2.3) Lus10000853 [exp] 637 / 0 AT1G21610 459 / 3e-152 wound-responsive family protein (.1.2.3) Lus10028666 [exp] 241 / 2e-70 AT1G77310 261 / 3e-78 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08729 [poplar] [flax] HUN HPC2 and ubinuclein domain
Representative CDS sequence Show only first row Show all	>Potri.002G078800.1 pacid=42777110 polypeptide=Potri.002G078800.1.p locus=Potri.002G078800 ID=Potri.002G078800.1.v4.1 annot-version=v4.1 ATGGATGAAGGGAGCAGTCGTGGCGGTGGTGAAGGTGGGGGAGAATCGTCCTCGTCAAGGGTAACGCCGTCTTATGTAAAATTAGGAGACAGGCAAATAT TCACCGTGGAGCTCCGACCCGGAGAGACGACATTTGTGTCGTGGAAAAAGCTTATGAAAGACGCCAATAAGGTCAATAATAGATCCGCACCCGCCGCACC AGACCCTCCTCCCGTTAACGCCCACCCTAACCTCGAGTCTCGAATTGCCCCACCACAAGTGACCGAGAATGAAGTGAAGGATGACCCCCCTCCGAATCGT TTCAGTGCTGTAATCGAGAAGATTGAGCGTCTTTACACAGGTAAGGATAGTAGCGACGAGGAGGATCTAATGGATGCTCCTGATGATGATCAGTATGATA CAGAAGATTCTTTTATTGACGATGCTGAGCTGGATGAATACTTTGAAGTTGATAATTCAGCAATAAAACATGATGGCTTCTTTGTTAACAGGGGGGAGCT GGAACGCATAAATGAACCTCCTGTTGTGCCTAACGAGAAACCAAAGAAAAGGAGAAGAAAAGATTTATTGAAGGCACCTAATGATTCTGATGATGGTCAT ATGTCAAATAAACTTGCGAAGCTGGGAAAATCAGCTGCGGAGAAGATGGCACCGCCTCCTGGAAAGAACTCTTTGAACCTTTCTCAGAATTTGACTATGA TAAGTGAGCAGTATGAGAATGTGAAGTTCCAGAATCAATCAAATTCACCTGGAATTTCTTCCAAAAAGAAACCTGCTGAAACGAAAATGAAGTTGGATCC ATCTTTATCAGTGAAAGTTTTGAATGGCGATGCTTATGCATCTCTGGAAGAAACAACGGATAATGAAAAGCCAAAGACCGGGTGCCTCCTGCCAAAGAAC CTCACTAGCAAACCTAAAGATGCAAGTGGATTCTCTGAATCTTCAAATCAGAAATATCATGAAAAAAGTGCTTATGTGCAACCCAAGTCACAATCAGCAA AAACTGTAGACCATTGTGATGATCTTGAACCATCAGTTAGATTAATAGAAAAGAATGGGGTCCGTGAACTTCCTGATCTCAATCTTAATATTTCTGACAG CAAGATTTACACACAAGCAGCAAGAACTTCACATGTCCACAGAAAGGATGGTTCTAGTGTCAGGCCTAAAAGTTCAATGCTAGAAAAGGCTATCAGGGAG TTAGAGAAGATGGTTGCAGAATCAAGACCGCCTGCTGTGGAAAATCAAGACACTGATGCCTCAGCCCAGGCAATTAAAAGAAGATTACCTACAGAAATAA AGCTGAAGCTTGCCAAAGTTGCCAGACTAGCGGCAAGCCAGGGAAAATTGTCAAAAGAGTTACTCAATCGTCTCATGAGTATTCTTGGTCACTTAATTCA GCTTAGAACACTGAAGAGAAACTTGAAAATAATGATTAACACAGGTTTGTCAGCAAAGCAGGAGAAAGCTGACAGGTTTCAACAGATAAAGAAGGAGGTC GCTGAGATGATTATGACACGCATCCCCTCTGTGGAGTCTAATGCATTAGTTCAACAAGCTGGAGCGTCTGATGATTTTCAAGAAATGGTATCTGATGAAA GAGGGGGCCTGAAAAAGAAATTTAGCATGGATGCTGTGTTGGAGGATAAAATTTGTGATCTCTATGACCTTTTTGTTGAGGGATTGGATGAAGATTCAGG TCCACAAGTCAGAAAGTTATATGTGGAGCTTGCTCAGTTTTGGCCAAGTGGTCTTATGGACAACCATGGGATCAAGCGTGCAATATGTAGGGCGAAAGAG AGACGGAGGGTTATGTACATCAGAAATAAGGATCAAGATAAAATAAAGAGTAAAAAGATGTTTACTCCTAAACAAGAGGAGGGTGTTAGAATTGAGTCTG GTTCAGTTGCTCAGCCACAACATGTGCAAGAAAGGTTGGCCACTGATATGGTTGGTCCTGTTTTGGCCTTAGCTCGTAAGCCGGTTCCCAATTCCATAGC AGCAGCTGTTCAGTTTCCTAGTCCTTCAGCAAACGGTCTTGTATTGGACAAGCTAAAACAAGAGAAGCCAAAAGGAAGTTCAAGCAATTCCATGGATGGG GCAAAGATGGGAGTTGATGGTGCTTTGCCAAAGAAGAAGGTAAGGAGGAAGCCGGAACAAGAGTTGGATGGAACTCATCCCCGTTCAGAGAAGTTGCATC CTCAATCTAGCGGGGAAAGACACAAGTCTCTTAAGCATGCATCTGGTCTTCCCCAGAAGTTAAACCTTCAATCATCTGCCCCTCCAAGCCTCGAACCGTC GAGCTGA
AA sequence Show only first row Show all	>Potri.002G078800.1 pacid=42777110 polypeptide=Potri.002G078800.1.p locus=Potri.002G078800 ID=Potri.002G078800.1.v4.1 annot-version=v4.1 MDEGSSRGGGEGGGESSSSRVTPSYVKLGDRQIFTVELRPGETTFVSWKKLMKDANKVNNRSAPAAPDPPPVNAHPNLESRIAPPQVTENEVKDDPPPNR FSAVIEKIERLYTGKDSSDEEDLMDAPDDDQYDTEDSFIDDAELDEYFEVDNSAIKHDGFFVNRGELERINEPPVVPNEKPKKRRRKDLLKAPNDSDDGH MSNKLAKLGKSAAEKMAPPPGKNSLNLSQNLTMISEQYENVKFQNQSNSPGISSKKKPAETKMKLDPSLSVKVLNGDAYASLEETTDNEKPKTGCLLPKN LTSKPKDASGFSESSNQKYHEKSAYVQPKSQSAKTVDHCDDLEPSVRLIEKNGVRELPDLNLNISDSKIYTQAARTSHVHRKDGSSVRPKSSMLEKAIRE LEKMVAESRPPAVENQDTDASAQAIKRRLPTEIKLKLAKVARLAASQGKLSKELLNRLMSILGHLIQLRTLKRNLKIMINTGLSAKQEKADRFQQIKKEV AEMIMTRIPSVESNALVQQAGASDDFQEMVSDERGGLKKKFSMDAVLEDKICDLYDLFVEGLDEDSGPQVRKLYVELAQFWPSGLMDNHGIKRAICRAKE RRRVMYIRNKDQDKIKSKKMFTPKQEEGVRIESGSVAQPQHVQERLATDMVGPVLALARKPVPNSIAAAVQFPSPSANGLVLDKLKQEKPKGSSSNSMDG AKMGVDGALPKKKVRRKPEQELDGTHPRSEKLHPQSSGERHKSLKHASGLPQKLNLQSSAPPSLEPSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77310			unknown protein		Potri.002G078800 [exp]	0	1
AT3G06670			binding (.1.2)		Potri.008G107300 [exp]	1.73	0.8815
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.004G081800 [exp]	5.29	0.8516
AT5G22010		ATRFC1	replication factor C 1, replic...		Potri.001G213900 [exp]	6.00	0.8140
AT5G12430		TPR16	tetratricopeptide repeat 16, H...		Potri.009G050200 [exp]	6.00	0.8211
AT4G24900			unknown protein		Potri.012G098000 [exp]	6.70	0.8169
AT3G50380			Protein of unknown function (D...		Potri.007G034900 [exp]	7.34	0.8275
AT4G15090	FAR1_related	FAR1	FAR-RED IMPAIRED RESPONSE 1, F...		Potri.003G110300 [exp]	11.31	0.8104
AT5G45030			Trypsin family protein (.1.2)		Potri.015G121400 [exp]	13.07	0.7788
AT3G17450			hAT dimerisation domain-contai...		Potri.002G188400 [exp]	14.24	0.8108
AT4G11110		SPA2	SPA1-related 2 (.1)		Potri.003G137100 [exp]	14.49	0.7777

Compare expression of checked genes

Potri.002G078800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.