Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21600 399 / 5e-140 PTAC6 plastid transcriptionally active 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028562 [exp] 380 / 2e-132 AT1G21600 369 / 4e-128 plastid transcriptionally active 6 (.1.2) Lus10018866 [exp] 379 / 2e-132 AT1G21600 370 / 1e-128 plastid transcriptionally active 6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G078900.8 pacid=42777074 polypeptide=Potri.002G078900.8.p locus=Potri.002G078900 ID=Potri.002G078900.8.v4.1 annot-version=v4.1 ATGATCACCGCCACACTTTCCCTCCTCTCTCCAGCACTCCTCACCAGAAAACCCCCAATCCTAACGACCACCGCCCCTCTCTTCCCCTCTTCCCTCAAAC TCACACCAATTTCACACAATTTCACCTTCAAACTCCCACCAAAAAGGTTCATTCCCAAAGCCGACGACGGAGACGCAGATGGAGGGCCAGATGACTATGA CATGGACGAGGAAGAAGTGGAGGAACTGGACAATAAGAAAGACTACGACGTTGAGTACGAACCTTTGTCTGCTTCAGCTATCGCAGTTGGTAACGAAGAC GAGGAGATTTCTATGGTGAATAGTAAGAGTTTTGTGCACACACAAGGCTGGGATTCTGAGAAAATTGTCGATTATAGGATTAACGAGGAAGAATTTCATA AAATTAGCTTGTTCGATTGTGACTTCTTTATTAGGAAGCCGCCTGACCCTGACGATGACGTCTATGATTTTAGAGAGATGTATGTTACTCCACCGGATAC AGATGTTTATGCTATACCGAAGGTTCTTGCTCCAATGCCTCAAAAGTACATACGATGCGCAGAGACTGACTATGGAGGTTATAATGTTACTGAACCACCC ATCGATGCGCCTCGAGATCCATTTTATAAATCCGAGAGGGAGATCTGGAAGGTGTTCTTGTTTAAGCATTACAGGAACCGGAGGTTGGGGGATCCTGATT TTGTGCTAGACTTTGACGAGATTTACGTTATTGATTCCAAAACAAAGTCAATAACAAGAGCAAAAGTACTGGTCACAGTTCCTGGAGGAAGAAATAGGGA TAGAAAGACCGACTTGCTTGTAGTGCGCGATAAAGGGACCTCATTCAAAATAATCCATTCGAGTGAAAGGGATGACCCCACCACTATTATAGAGAAGGAA GAGTGGGCAAGGTCTAGACAAGATATGGAGAGGCATCTCAGAAAGTTACGGGACTTTGATGTTTCAAATTGGTTCTAA
AA sequence Show only first row Show all	>Potri.002G078900.8 pacid=42777074 polypeptide=Potri.002G078900.8.p locus=Potri.002G078900 ID=Potri.002G078900.8.v4.1 annot-version=v4.1 MITATLSLLSPALLTRKPPILTTTAPLFPSSLKLTPISHNFTFKLPPKRFIPKADDGDADGGPDDYDMDEEEVEELDNKKDYDVEYEPLSASAIAVGNED EEISMVNSKSFVHTQGWDSEKIVDYRINEEEFHKISLFDCDFFIRKPPDPDDDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIRCAETDYGGYNVTEPP IDAPRDPFYKSEREIWKVFLFKHYRNRRLGDPDFVLDFDEIYVIDSKTKSITRAKVLVTVPGGRNRDRKTDLLVVRDKGTSFKIIHSSERDDPTTIIEKE EWARSRQDMERHLRKLRDFDVSNWF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21600		PTAC6	plastid transcriptionally acti...		Potri.002G078900 [exp]	0	1
AT5G62990		EMB1692	embryo defective 1692, Ubiquit...		Potri.002G233900 [exp]	4.47	0.9656
AT4G18520			Pentatricopeptide repeat (PPR)...		Potri.005G170300 [exp]	5.47	0.9630
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Potri.008G193800 [exp]	7.93	0.9545
AT3G53630			unknown protein		Potri.006G082400 [exp]	8.12	0.9362
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Potri.010G136800 [exp]	8.66	0.9575
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Potri.008G112700 [exp]	11.61	0.9520
AT4G37380			Tetratricopeptide repeat (TPR)...		Potri.007G050200 [exp]	11.66	0.9571
AT1G71460			Pentatricopeptide repeat (PPR-...		Potri.019G075400 [exp]	12.48	0.9554
AT2G35490			Plastid-lipid associated prote...		Potri.003G095900 [exp]	13.56	0.9541
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Potri.004G112800 [exp]	13.85	0.9310	Pt-NEMDH.2

Compare expression of checked genes

Potri.002G078900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.