Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77300 819 / 0 ASHH2, CCR1, SDG8, EFS, LAZ2 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) AT1G76710 204 / 6e-56 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) AT3G59960 136 / 3e-34 SDG24, ASHH4 SET DOMAIN PROTEIN 24, histone-lysine N-methyltransferase ASHH4 (.1) AT4G30860 137 / 2e-33 SDG4, ASHR3 ASH1-related 3, SET domain group 4 (.1) AT2G44150 134 / 2e-33 SDG7, ASHH3 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) AT1G05830 94 / 1e-18 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT5G42400 90 / 2e-17 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT2G23740 89 / 5e-17 C2H2ZnF AtCZS nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) AT2G31650 85 / 7e-16 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT1G02580 81 / 7e-15 SDG5, EMB173, MEDEA, FIS1, MEA SET DOMAIN-CONTAINING PROTEIN 5, MEDEA, FERTILIZATION INDEPENDENT SEED 1, EMBRYO DEFECTIVE 173, SET domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G182100 [exp] 3392 / 0 AT1G77300 807 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Potri.005G195400 [exp] 196 / 2e-53 AT1G76710 657 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Potri.007G147200 [exp] 162 / 6e-43 AT2G44150 477 / 2e-169 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Potri.017G000400 [exp] 159 / 4e-42 AT2G44150 471 / 5e-167 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Potri.018G102100 [exp] 138 / 1e-33 AT4G30860 585 / 0.0 ASH1-related 3, SET domain group 4 (.1) Potri.007G033000 [exp] 99 / 3e-20 AT2G23740 1436 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.002G232800 [exp] 96 / 2e-19 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.013G064600 [exp] 92 / 4e-19 AT3G03750 258 / 1e-83 SET domain protein 20 (.1.2) Potri.005G260100 [exp] 94 / 1e-18 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028662 [exp] 986 / 0 AT1G77300 774 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Lus10000967 [exp] 963 / 0 AT1G77300 748 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Lus10016600 [exp] 197 / 8e-54 AT1G76710 600 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Lus10039118 [exp] 160 / 3e-42 AT2G44150 434 / 1e-152 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Lus10038740 [exp] 149 / 2e-37 AT2G44150 399 / 5e-137 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Lus10003777 [exp] 130 / 1e-30 AT4G30860 451 / 9e-154 ASH1-related 3, SET domain group 4 (.1) Lus10016788 [exp] 101 / 8e-21 AT2G23740 1325 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Lus10022483 [exp] 100 / 1e-20 AT2G23740 1070 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Lus10026725 [exp] 93 / 2e-18 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10025508 [exp] 92 / 3e-18 AT1G05830 1256 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain PF07496 [poplar] [flax] zf-CW CW-type Zinc Finger
Representative CDS sequence Show only first row Show all	>Potri.002G079100.4 pacid=42777238 polypeptide=Potri.002G079100.4.p locus=Potri.002G079100 ID=Potri.002G079100.4.v4.1 annot-version=v4.1 ATGGGCGCGTGTGAGCCTCACGAGCCCTTGAATCTTGCTGCGACTGAGCAGCATTCATGCCTGGAGTTTATCAAGAATTCTGAGCAGCTGCCAGCCTTGG AGACTGGTCGGAGTGCTATTGAATTTTACGCGGACCCCTCTAGGGCAACAAATGGGTTTGCAGAATTGTCTCAGAAAGATAATGGTGTTTGTGCTAGCTA CAGCGATGTTATGGAGGCTGTGTTGGATGATAGGGGAATTGGGTTGGCGGGTGAGGGTGAGAACGTGGTTGGTTCGATAGCAGGAAGATTGTTGGAGGAT GAATCTGGGGTTGGTGAGGAATGTTTGGATGAGGGTCAAAGTGGAAGGGATGATTGTATCAGGGAGACAGATAGATTCTGGGAGGAAAAAGTAGGGCTTG GAGGTGAGAATGGTGGAGCTGTAGATTGTGAAGGGTCTTTGGAACTGCTGGTTGTTCCTGATTCACTGAAAAATTGCAATCAACAGGATGACCAAATGGA TGATAAAAATGCTGGTGTTCAAGGCACTATGGAAGAGGGCAGTGATGGTCTAGCTACAGCAGAGACTGACGCTTCTGATGAAACAGTGCCACCAACCGCT TGTGGAACATCTGTAGAATTAAACCCTGTGAATGATATGCCTAGAAATTGTGATCAACAAGATGGCCAGAATGAAGATGAGAGTGGAAATGTTCAAGGGG TTATTGAAGATGACGGTTTAGATGCAATAGAGACTGTTAAACCCAACAAAATAGTTCTTTCACTGGGCTGTAAGATGCCAGCTGAATTAGTGCAAGCAAA TGATTGGTGCAGAAATGGCGGTCAACAAGATGACCAGAGGGATGATAAGAACGTTAGTGTTCAAGGGGTTATGGAAGAAAACAGTGGTGACTTGGCTCCA ATAGAGGTTGATACACATGATGAAATAATGCTTTTATCGGGTAGAGAAATGCCTGCAGAACTAATACCAGTAAAAAGTTTGCCTGGTGATGTCAGTGAAC AGTACAACCGTGATTGTGGTGCCTCTCAAGAAGTGATTGTGGAAGAGAAAATTGGCAATTTTACTGCCCTAGGGAAGAGCAACGTTCAAGGGGTGATGGA ACAGAAAAGTAATGGTTTAGTGGCGACGGAGACTGTTGATACTTGTGAAAACATATTGCCTTCACTGGGCTATGAAATGCTTGCAAAATGTTTGCCTAGA AATGGTGTTGAACAGGACATGCAAGACAGTGGTACCTCTATGGTGGTGACCATGGAAGAGAAAAACAATGATTTAGCTGGGATAGAGAGTATTAGTATTC AAGGGGTCATGGAAGACAAAACTGATGGTTTAGCTGCAACAGAGACTGCTACCTGTAATGAAATAGGTCCTTCACCAAGCTGTGAAATGCCTGTTGGATT GATTTCAGTGAATGTTTCACCTAGAAACGGTGTTGAACAGGACAAGCAAGATGATGGGACATCACGTACTATGGTTTCAGAAGAGAAAAGTGTTATCTTA ACTAGGTTAGAGACTGATAATCAAGACCAAAAGTTGCTTCCACTGGACCATGAAATACTCTTGGAATTGACACCTGTGACATGTCCACCAAGCAAGTGTC TTCAGCAGGATGACCAGAAGGGTGATCAGATCATTAGCCGTCCCTTTGCAGGAGGGGTTATGGAGGAGCCAACTTTTGTTTTAGATGCGGCTGAGACTAC TACTTCCAACTTGTCGTTGCCATCACAGGAGAACTTGAAATTAATGCCCACGACTGGTTTGCCAGAAGAAAATGTTCATCATGATGAGCAGAAGTTGATA CCATGTAAACTGGATTCCAAGGCTGTCAATGGTCTAGCTATAGAGTGGGTTCCAGAACAGGAAAGCAATGCCTTGGCTAGGACAGAAGCTGGCATTTGTT CCCAGGCATCAGCACATGGCACTATTGATTCTAGCAGTGCAGTTGACTGTTCTGGAGAGACAGACTATGAAGCAAAGAATAATGTCAGCATTGATAGTGT TTCTGAAACCAAGTGTCATGTCATTGTATCACCATCTTCACGAAGGAGCAATGGAACACGGAAATCAAGCCAGAAGACCCAGACAAAAAGGGGTGCAAGG AAATGTAGGAACACAACCAAAGTCCCAAACCTGCATCGAGGTATTGAGATCGTCTTCAAGAGTGTGACAAGGAGGCGGAGCTGCTTCTCCAAACCAGCTC GCTCTTCTGCTTGGGGATTATTGGGGAATATTACACAAACTTTTATGCTGATTAATGGTCTCAGACCTGATGAAATTGAGAATCTTGGATCACAGAAGGC AAGGGGTGACCAAGGAAGTGGAAAGCGGAATAAACTTGCTGGTGGAACCTCACGAAGGTCCAGCAAGAAAGGTCATGCTTCAGCTCATTGCATTCGTTTG AAAGTTAAAGTGGGAAAAGATGCTTGTCAAACTGAAAGTAATCCAAAGATGATAATCCCCGAGGTAATTAATACTAAGGCATCTGGTGATCTTGTTAGTG ATTATGGGGCTGAGTCATGCCAGGAAACCAGTTTTGAAATTTCAAAGTTAGCCTATTGTGTGGGAGATAACATGGTTGAAGAGGGAACTCAAAAACAGCT TCAGTCTTTTTACATTAAGTTGGGGAAGGCAAAAGCACACTGTGATGCTTCTGCTATGGATGTAAAACTTGCAAACAAGGACATGGAGGGCACTGTAATT TCTGAGAAGTCATCTAGAGATATTATGGAAGATTATCTTGGGGTTCCTTCCCATACAGAGGTTGAAGCACTGGGAGTTGCAACTGAGAAGAGGTATACAG ATGCTGGAACTTCACCAGATTCGGAAGTTATAAATTCAGTACCCGAGGTTCAAGTCAATGCAAGATGTCAAGAAGATTATCCTGATGCTGTTCTGTCTCC TTCTAAGGCTTTTGCTGCAGATGAAGAGGGTACTGGTGGAAAGAGGGGAAAAAAGAAAGAAAGCCTCCCTCAAGCAGGAAACTGTTCACCTGCTGTGGCA AGCTTAAAGAAAGTTAAATTGGCAAAGAAACGTGGGGGCAGGCAGAGAAAGGGTGATAGTCTTTCCTCTAGTGAGATTCTTACATCATGCACCAGTGCTA ATGGTTCTGTCAACACAACAAGCACTAAAGAATATTCAGCAGAACTGGTACTTTCATCAGGAAAGACGGAACTTGGAGACCCTGAAGGGGCTTTGAGAGG AGAAATCATTATGGAAACTAAAATATGTGGTGAACTGGATGCTGACGTTAGGTCGTCTGAATCACAGATTTCAAAGAATCCTCTTCCTTCAACTAAATCC AGGGGACGCCGACTTCCAAGGAAATCTGATGGAGTAAACAAGAGAAGGTCCAAAGTCTCTGACTCTGCAAAAAGCAGGAGGGCAAATGGTTGCAAGGAGA GAGGAAATGATAGGAAGTCAGTTAAAAAGAACAAAGCTGAGGAGAAGAGTGTTTGTGATCATGTTGTTTACAAAGATGACAATGGAAAAACTGATGCTGG CAATGATACTACTGCAGAAGAGGTAACTAATCTGGACATGCCGTCAAGTGGGGTAATGGAACAAAATTTATTCCCAGATAATGCTTGGGTTCGCTGTGAT GATTGTCTTAAATGGCGGCGTATTCCAGTTAGACTTGTAGAATCTATCAGTCAAACACATCGCCAATGGATCTGCGAGGACAACATGGATAAAGCCTTTG CTGATTGCTCCTTCCCCCAAGAGAAGTCAGATGCAGAAATTAATGCGGAGTTGGGCATATCAGATGCTGATGAGGATGTTTGCGATGCTCCTTCAAATTA TATGGAATTAGAATGTGGACCGACATCAGTTTCCAAGGAGTATGAATTTACGCGCATTACTACCAATCAGTTTCTGCACCGCACCCGTAAAACTCAAACT ATTGATGAGATAATGGTTTGCTACTGCAAAGCACCTGTGGGCGGCAGGTTAGGTGGTTGTGGAGATGAATGCTTGAATCGAATGCTCAATATTGAGTGTG TTCAAGGCACCTGTCCATGTGGGGACCTTTGTTCAAATCAACAGTTCCAAAAGCACAATTATGCCAAAATGACATGGGACCGCTGTGGGAAGAAAGGTTT TGGGCTGCGGTTGGAAGAGGATATAACCAGAGGGCAATTCCTTATTGAATATGTTGGAGAGGTGCTTGATGTGCATGCTTATGAGGCAAGGCAAAAAGAG TATGCTTCCAAGGGTCACAAACATTTCTACTTCATGACATTGGATGGCAGTGAGGTAATTGATGCATGTGTGAAGGGAAATTTGGGGCGTTTCATTAATC ATAGCTGTGATCCTAATTGTCGTACCGAAAAGTGGGTGGTCAATGGAGAAATCTGTATTGGATTGTTTGCATTAAGGGATATCAAGAAGGGTGAAGAGGT GACATTTGACTACAACTATGTAAGAGTGGTTGGGGCTGCTGCTAAAAGATGCTATTGTGGTTCACCTCAATGCCAAGGCTATATTGGTGGTGATCCAACT AGCTCTGAAGTAACTGATCAAGTTGATTCGGATGAAGAATTTCCTGAACCTGTAATGCTTGAAGATGGGGAAGTTGGAGATGGCTTAAAAAATAAAATAT CCAAAACCAGTTTCTTCGGTTTATCAAAAGGTAGGGAAATGGAATCCAAAACAGCAGTTGGGAACTTGGAGGTTGCCACTGAAATTAAGGATTCAATGAA CCAATCAACTCCTGCCATTTCTCAATCACCCAGTGAATCAGAAATGAATGGCTTACCTGGAGATTTTTCTTCCTCAAGTAAACGAGTAGAAATCTCCCCA CAGACTGAAGACATGACAACCCAACCCACACCTGCTGTTCAGCAGGAGATTTCCATGGAAGAGATGATGGATAAATCCTTGTATTCCAGTCAAAAGTTGA AGACTTCTCTGACCTCAGTGCTCATCAAACCATTGCCTGATGACATTATGATTAACAGGAAGTCTAAATCTGCCACAGCTGAAAACAAGCGGGTTTTTGT TAAATCTCGTTTTATTATTAAAACTCCACCCCAATCTGGTTTGATTAAGAAAGGAAAGTCCGCCAGCAATTTTATAAACATAAATAAGGTTCAGACAATA ACCAACAAACCTCATATGCCGCCTATCAAACCCAAAAAATTATCGGAAAGTACCTCAGATGGCCATTTTGAAGCAGTTCAGGAGAAACTTAACGAGTTGT TGGATTCTGAGGGTGGCATAAGCAAGCGGAAAGATGCCCCCAAAGGCTACCTGAAACTTCTCCTCCTCACTGCAGCTTCTGGTGCTATTAGAAATGGTGA AGCAATTCAGAGTAATCGAGAGCTTTCAATGATACTTGATGCACTCTTGAAAACTAGATCCCGAATGGTATTGATGGATATAATTGAAAAAAATGGTTTA CGGATGCTTCACAACATAATGAAGCAGTACAGAAGGGATTTTAAAAAGATTCCGATTCTTCGAAAGCTTCTAAAGGTTTTAGAGTATTTGGCCGTTAGGG AGATACTTACATTGGAACATATAAACGGAGGTCCTCCTTGTCCTGGAATGGAAAGCTTTAGAGAGTCCATGCTGTCCCTGACAGAGCACAATGACAAACA GGTTCATCAAATTGCACGAAGTTTTCGAGATAGATGGATCCCTAGACAAGTCAGAAAACTTGGCTATATGGATAGGGATGGTGGTAGGATGGAGATTCAG AGAGGTTCAAACTGCAACAAGGTTTTAGCTTCTCATAGTCAATGGCATGATCAGGGTGTAAGACACTTGGAAGCACTGAATGGTACGGTGGAATCAAACC TAGCAACAACCTCAGTGGGCACTGCTGTCCACGAGGACAGCTCTGCGAACCGTGTAGGTAGTGGTACAAGAACTCGGAAGCGTAAAAGCCGTTGGGATCA ACCAGCTGAGGAAAACATAGCTTCCAGATCTCTTCAGCATGTTGAACAGAACGAGTCTGGGTTATTACAACAATCTGAATCCAACTCATTACCTGAGTTA AGTAAAGAAGTGCCAGATCATGTAGACAAGGCAGGTGGAGAGTACAGTTATTGCCCTCATTGTGTTCACAGTTATTGTTGGCAAGATGAAGCTAGTGGTG CCGATAATGGAAGGCAGAATATTCATGAGGATGTTCCACCAGGATTCTCATCTCCTATTGACCCCGCTCTTGTGTCCAATGCTTCTTCTACTGTTGATGA TCTCCCACACCAAAATGTTTTCCATTTGAAGTTTCCTGTTGGTGTGGTTGTTGGCCTTCCACAGAGGAAATTCAATTCCCGCTTTCCTGTCTCATATGGA ATTCCGTTGCCTGTTGTGCAGCAATTAGGGTCACCTCTGGCTGAAACTGTAGAGGGTTGGATTGTTGCTCCTGGCATGCCTTTCCATCCTTTTCCGCCAT TACCACCACTTCCCTCCTGTAAGAAAGGGACTCTGCCATCTGCTATGAACTCTATGGAGATTGATGACACTGCAGATCGAGGGAAACAGGACTGCTATGA TCGCACCACTTGTCTAGATGAAAATAGTCCAAGCACGACTGGTGCTAACCAACCAGACCTGAACAGTCCAGGTCCGAAAGACCATCAAACATTTAAACGT GCAAGGGGGTCTTATGATTTGGGTAGGAGGTACTTTAGGCAACAGAAGTGGACTAAAATGCTTCCTCCATGGGTTCGGAGTAGGAATGGGTGGGGATGCA TTGGAGGCAACTCGAGAGGTGGAATGTGCAGCACTGACTTGGGAAGTCTAACAAATGAACAGAGAAACTCGTATTATTGA
AA sequence Show only first row Show all	>Potri.002G079100.4 pacid=42777238 polypeptide=Potri.002G079100.4.p locus=Potri.002G079100 ID=Potri.002G079100.4.v4.1 annot-version=v4.1 MGACEPHEPLNLAATEQHSCLEFIKNSEQLPALETGRSAIEFYADPSRATNGFAELSQKDNGVCASYSDVMEAVLDDRGIGLAGEGENVVGSIAGRLLED ESGVGEECLDEGQSGRDDCIRETDRFWEEKVGLGGENGGAVDCEGSLELLVVPDSLKNCNQQDDQMDDKNAGVQGTMEEGSDGLATAETDASDETVPPTA CGTSVELNPVNDMPRNCDQQDGQNEDESGNVQGVIEDDGLDAIETVKPNKIVLSLGCKMPAELVQANDWCRNGGQQDDQRDDKNVSVQGVMEENSGDLAP IEVDTHDEIMLLSGREMPAELIPVKSLPGDVSEQYNRDCGASQEVIVEEKIGNFTALGKSNVQGVMEQKSNGLVATETVDTCENILPSLGYEMLAKCLPR NGVEQDMQDSGTSMVVTMEEKNNDLAGIESISIQGVMEDKTDGLAATETATCNEIGPSPSCEMPVGLISVNVSPRNGVEQDKQDDGTSRTMVSEEKSVIL TRLETDNQDQKLLPLDHEILLELTPVTCPPSKCLQQDDQKGDQIISRPFAGGVMEEPTFVLDAAETTTSNLSLPSQENLKLMPTTGLPEENVHHDEQKLI PCKLDSKAVNGLAIEWVPEQESNALARTEAGICSQASAHGTIDSSSAVDCSGETDYEAKNNVSIDSVSETKCHVIVSPSSRRSNGTRKSSQKTQTKRGAR KCRNTTKVPNLHRGIEIVFKSVTRRRSCFSKPARSSAWGLLGNITQTFMLINGLRPDEIENLGSQKARGDQGSGKRNKLAGGTSRRSSKKGHASAHCIRL KVKVGKDACQTESNPKMIIPEVINTKASGDLVSDYGAESCQETSFEISKLAYCVGDNMVEEGTQKQLQSFYIKLGKAKAHCDASAMDVKLANKDMEGTVI SEKSSRDIMEDYLGVPSHTEVEALGVATEKRYTDAGTSPDSEVINSVPEVQVNARCQEDYPDAVLSPSKAFAADEEGTGGKRGKKKESLPQAGNCSPAVA SLKKVKLAKKRGGRQRKGDSLSSSEILTSCTSANGSVNTTSTKEYSAELVLSSGKTELGDPEGALRGEIIMETKICGELDADVRSSESQISKNPLPSTKS RGRRLPRKSDGVNKRRSKVSDSAKSRRANGCKERGNDRKSVKKNKAEEKSVCDHVVYKDDNGKTDAGNDTTAEEVTNLDMPSSGVMEQNLFPDNAWVRCD DCLKWRRIPVRLVESISQTHRQWICEDNMDKAFADCSFPQEKSDAEINAELGISDADEDVCDAPSNYMELECGPTSVSKEYEFTRITTNQFLHRTRKTQT IDEIMVCYCKAPVGGRLGGCGDECLNRMLNIECVQGTCPCGDLCSNQQFQKHNYAKMTWDRCGKKGFGLRLEEDITRGQFLIEYVGEVLDVHAYEARQKE YASKGHKHFYFMTLDGSEVIDACVKGNLGRFINHSCDPNCRTEKWVVNGEICIGLFALRDIKKGEEVTFDYNYVRVVGAAAKRCYCGSPQCQGYIGGDPT SSEVTDQVDSDEEFPEPVMLEDGEVGDGLKNKISKTSFFGLSKGREMESKTAVGNLEVATEIKDSMNQSTPAISQSPSESEMNGLPGDFSSSSKRVEISP QTEDMTTQPTPAVQQEISMEEMMDKSLYSSQKLKTSLTSVLIKPLPDDIMINRKSKSATAENKRVFVKSRFIIKTPPQSGLIKKGKSASNFININKVQTI TNKPHMPPIKPKKLSESTSDGHFEAVQEKLNELLDSEGGISKRKDAPKGYLKLLLLTAASGAIRNGEAIQSNRELSMILDALLKTRSRMVLMDIIEKNGL RMLHNIMKQYRRDFKKIPILRKLLKVLEYLAVREILTLEHINGGPPCPGMESFRESMLSLTEHNDKQVHQIARSFRDRWIPRQVRKLGYMDRDGGRMEIQ RGSNCNKVLASHSQWHDQGVRHLEALNGTVESNLATTSVGTAVHEDSSANRVGSGTRTRKRKSRWDQPAEENIASRSLQHVEQNESGLLQQSESNSLPEL SKEVPDHVDKAGGEYSYCPHCVHSYCWQDEASGADNGRQNIHEDVPPGFSSPIDPALVSNASSTVDDLPHQNVFHLKFPVGVVVGLPQRKFNSRFPVSYG IPLPVVQQLGSPLAETVEGWIVAPGMPFHPFPPLPPLPSCKKGTLPSAMNSMEIDDTADRGKQDCYDRTTCLDENSPSTTGANQPDLNSPGPKDHQTFKR ARGSYDLGRRYFRQQKWTKMLPPWVRSRNGWGCIGGNSRGGMCSTDLGSLTNEQRNSYY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77300		ASHH2, CCR1, SD...	LAZARUS 2, CAROTENOID CHLOROPL...		Potri.002G079100 [exp]	0	1
AT2G33540		CPL3, ATCPL3	C-terminal domain phosphatase-...		Potri.001G065600 [exp]	2.44	0.8083
AT2G39260			binding;RNA binding (.1)		Potri.008G045400 [exp]	8.48	0.7811
AT1G11950			Transcription factor jumonji (...		Potri.004G006200 [exp]	9.48	0.7208
AT1G70060		SNL4	SIN3-like 4 (.1)		Potri.010G038700 [exp]	10.09	0.7567
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Potri.008G192200 [exp]	10.24	0.7624	SNT901
AT4G00060		MEE44	maternal effect embryo arrest ...		Potri.014G066000 [exp]	11.83	0.7684
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.016G064100 [exp]	14.38	0.7436	Pt-UBP12.1
AT2G25430			epsin N-terminal homology (ENT...		Potri.006G255000 [exp]	14.49	0.6867
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.001G207700 [exp]	14.69	0.7732
AT1G07380			Neutral/alkaline non-lysosomal...		Potri.016G110000 [exp]	15.58	0.7008

Compare expression of checked genes

Potri.002G079100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.