Plant FIBer expression Database

Potri.002G079900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G21680 936 / 0 DPP6 N-terminal domain-like protein (.1)
AT1G21670 736 / 0 unknown protein
AT4G01870 449 / 2e-149 tolB protein-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028545
[exp]
906 / 0 AT1G21680 897 / 0.0 DPP6 N-terminal domain-like protein (.1)
Lus10038052
[exp]
459 / 9e-153 AT4G01870 825 / 0.0 tolB protein-related (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0186 Beta_propeller PF07676 PD40 WD40-like Beta Propeller Repeat
Representative CDS sequence
>Potri.002G079900.1 pacid=42779727 polypeptide=Potri.002G079900.1.p locus=Potri.002G079900 ID=Potri.002G079900.1.v4.1 annot-version=v4.1
ATGAAACCCCTAAAATTTCTGAACCTTCTCCTTCATTTTTCGCTAGCCCTATTCCATGCGACGGTAGCCCATGAACCTCCTAGTGGAACCAGCATCATCT
TTGCCACACTTGGCAGATTAGATTATGACTTTGACATATTTACCCTGCCAACCGGGGACCCGCCTACAAAAACCAACGAACTCCGAATTACAGATGGCGA
GTCAGTAAACTTCAACGGCCACTTCCCTTCTCCATCTTCCTCTCTCCTCTCTCTTTTAACCAACAAAACCCTAATAAACCCCCCTGGCCAACAAAACCCA
TCCCCCCTGAACCTCATCTACGTCACAGAACGCGGTGGATCGTCAAATATCTTCTACGATGCGGTTTATGTCGATATTCCGCGAAGCGCCCGATCAAGGT
CAGCCCTTGAAATTCCTAAACGTGTACAAGTTCCTTTATTGGATGGAAAAGGTGGAATTTCGATGAAGGATAAGCCCACTGTGAGCGGAGATTATTTAGT
ATACGTGTCAACACATGAAAATCCAGGCGAGCCAAGGACGAGTTGGGCTGCAGTGTACGCAACCGAGTTAACAACCGGGTTGACTCGGCGACTCACACCA
CATGGAATTGCCGATTTTAGCCCTGCAGTCTCTCCTTCTGGCGTTTACACAGCTGTCGCTTCTTATGGAGAGAGAGGATGGAGCGGTGAAGTGGAGGAAC
TCAGCACAGACATCTATATATTCTTGACTCGTGATGGGACTAACCGAGTTAAGGTGGTCGAACACGGAGGTTGGCCGAGCTGGGTCGACGAGTCCACCTT
GTACTTCCACAGAAGAAGCGTAGAGGATAACTGGATAAGTGTTTATAAGGCGACTTTACCGAATCATGGACCGATCTCGATTGAGTCAGTGATCGTCGAG
CGAGTTACACCACCTGGTCTTCACGCGTTCACCCCAGCTACTTCTCCAGGTAACAAGAAGTTTATAGCAGTAGCCACGAGAAGACCTAACTCGGATTATC
GCCATGTAGAGCTATTTGACCTGGTTAAGAACGAGTTTATCCAGTTGACTCGGTTAGTATCTCCCCAAACTCACCACTTGAACCCGTTTATCTCACCCGA
CTCAGCCCGAGTTGGTTACCACAGATGTAGAGGTGCTACCAGTGATAAAAAGAGCACCCACTTGTTACTGGAGAATGTCAAGAGCCCTGTACATGACATT
TCGCTTTTCAGAATTGACGGGTCGTTTCCTTCCTTCTCACCCGGGGGTGACCGTATTGCTTACGTTGATTTTCCGGGTTTGTATGTTGTGGACCGGGACG
GTTCGAACCGGCGACAGGTTTTTACTGGGATGGCATTCTCGACCGCTTGGAACCCGGCTCGTAAAGGTGTTGTCTACACAAGTGCTGGACCCACTTTTGC
CAGTGAGAGTACCGAGGTAGATATAATCTCCATTAATGTTGATGATGATTTGGGGCAAATTAATAGTTTTAAAAAGTTGACCTCTAATGGTGAAAACAAT
GCATTTCCTGCGGTTTCACCCGATGGGAAATGGGTAGTGTTTCGGTCCGGTCGGTCCGGTCATAAGAACTTATATATAATGGATGCTTCGGAAGGGGAGA
ACGGTGGGCTCTATAGGTTGACAGAGGGTCCATGGAGCGACACCATGTGTAATTGGTCACCAGATGGCGAATGGATTGCTTTTGCATCCGACCGGGAGAA
CCCAGGTTCAGGAAGTTTTGAGTTGTTTTTGATCCATCCGAATGGAACTGGTTTGAGGAAGTTGGTTCAAAGTGGGTCGGCTGGGCGGGCTAACCACCCT
TATTTTAGCCCCGATGGAAATAGTATTGTGTTTACCTCAGATTATGGGGGCATATCAGCTGAGCCAATCTCAAACCCCCATCATTATCAGCCTTATGGAG
AGATCTTCACGGTTAAATTGGATGGCTCTGATTTGAAGAGGTTGACACATAATTCGTACGAGGATGGAACCCCTGCATGGGGGCCTACATATATCAAGCC
TGAGGATGTGGAGTGGCCAGGTCACGGACCACAGTGCTCCTTTGAGGAGTGCCACTGGCTCAATAAAATGCCAGTTCTTGGTGATTGGGCTGCACCGTGG
GACTCAACCAAGCCTCAATGTAGCAGTGCTAGCCCATAA
AA sequence
>Potri.002G079900.1 pacid=42779727 polypeptide=Potri.002G079900.1.p locus=Potri.002G079900 ID=Potri.002G079900.1.v4.1 annot-version=v4.1
MKPLKFLNLLLHFSLALFHATVAHEPPSGTSIIFATLGRLDYDFDIFTLPTGDPPTKTNELRITDGESVNFNGHFPSPSSSLLSLLTNKTLINPPGQQNP
SPLNLIYVTERGGSSNIFYDAVYVDIPRSARSRSALEIPKRVQVPLLDGKGGISMKDKPTVSGDYLVYVSTHENPGEPRTSWAAVYATELTTGLTRRLTP
HGIADFSPAVSPSGVYTAVASYGERGWSGEVEELSTDIYIFLTRDGTNRVKVVEHGGWPSWVDESTLYFHRRSVEDNWISVYKATLPNHGPISIESVIVE
RVTPPGLHAFTPATSPGNKKFIAVATRRPNSDYRHVELFDLVKNEFIQLTRLVSPQTHHLNPFISPDSARVGYHRCRGATSDKKSTHLLLENVKSPVHDI
SLFRIDGSFPSFSPGGDRIAYVDFPGLYVVDRDGSNRRQVFTGMAFSTAWNPARKGVVYTSAGPTFASESTEVDIISINVDDDLGQINSFKKLTSNGENN
AFPAVSPDGKWVVFRSGRSGHKNLYIMDASEGENGGLYRLTEGPWSDTMCNWSPDGEWIAFASDRENPGSGSFELFLIHPNGTGLRKLVQSGSAGRANHP
YFSPDGNSIVFTSDYGGISAEPISNPHHYQPYGEIFTVKLDGSDLKRLTHNSYEDGTPAWGPTYIKPEDVEWPGHGPQCSFEECHWLNKMPVLGDWAAPW
DSTKPQCSSASP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G21680 DPP6 N-terminal domain-like pr... Potri.002G079900
[exp]
0 1
AT2G14910 unknown protein Potri.001G298200
[exp]
5.91 0.8791
AT1G68570 Major facilitator superfamily ... Potri.016G032000
[exp]
16.00 0.8516 Pt-NITR1.1
AT3G26770 NAD(P)-binding Rossmann-fold s... Potri.004G200100
[exp]
33.40 0.8714 Pt-CTS2.8
AT2G45630 D-isomer specific 2-hydroxyaci... Potri.014G073500
[exp]
36.37 0.8572
AT5G01015 unknown protein Potri.006G113700
[exp]
36.83 0.8430
AT5G48730 Pentatricopeptide repeat (PPR)... Potri.002G243600
[exp]
50.21 0.8629
AT2G37678 PAT3, FRY1, FHY... PHYTOCHROME A SIGNAL TRANSDUCT... Potri.006G087300
[exp]
54.41 0.8419
AT1G64720 CP5 Polyketide cyclase/dehydrase a... Potri.012G021400
[exp]
54.55 0.8246
AT3G42630 Pentatricopeptide repeat (PPR)... Potri.018G146900
[exp]
59.24 0.8593
AT1G06510 unknown protein Potri.005G203100
[exp]
65.45 0.8511

Potri.002G079900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.