Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44110 592 / 0 CYCA1;1 Cyclin A1;1 (.1) AT1G77390 469 / 2e-163 TAM, DYP, CYCA1;2 TARDY ASYNCHRONOUS MEIOSIS, CYCLIN A1;2 (.1) AT5G25380 330 / 1e-108 CYCA2;1 cyclin a2;1 (.1) AT5G11300 327 / 1e-107 CYC2BAT, CYCA2;2, CYC3B CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) AT1G80370 321 / 9e-105 CYCA2;4 Cyclin A2;4 (.1) AT1G15570 319 / 2e-104 CYCA2;3 CYCLIN A2;3 (.1) AT5G43080 306 / 1e-100 CYCA3;1 Cyclin A3;1 (.1) AT1G47210 300 / 5e-98 CYCA3;2 cyclin-dependent protein kinase 3;2 (.1.2) AT1G47230 298 / 3e-97 CYCA3;4 CYCLIN A3;4 (.1.2) AT1G47220 278 / 7e-90 CYCA3;3 Cyclin A3;3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G181400 [exp] 879 / 0 AT1G44110 589 / 0.0 Cyclin A1;1 (.1) Potri.018G034100 [exp] 333 / 3e-109 AT5G11300 498 / 1e-174 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Potri.014G021100 [exp] 329 / 3e-109 AT1G47230 484 / 2e-172 CYCLIN A3;4 (.1.2) Potri.002G121500 [exp] 324 / 2e-107 AT1G47230 472 / 1e-167 CYCLIN A3;4 (.1.2) Potri.006G247200 [exp] 325 / 2e-106 AT5G11300 494 / 3e-173 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Potri.001G177100 [exp] 319 / 8e-104 AT1G80370 483 / 2e-168 Cyclin A2;4 (.1) Potri.003G058200 [exp] 303 / 9e-98 AT1G80370 494 / 9e-173 Cyclin A2;4 (.1) Potri.009G093100 [exp] 278 / 5e-89 AT5G43080 288 / 9e-95 Cyclin A3;1 (.1) Potri.002G010000 [exp] 191 / 2e-55 AT1G76310 550 / 0.0 CYCLIN B2;4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029700 [exp] 637 / 0 AT1G44110 544 / 0.0 Cyclin A1;1 (.1) Lus10042739 [exp] 608 / 0 AT1G44110 508 / 1e-177 Cyclin A1;1 (.1) Lus10028544 [exp] 548 / 0 AT1G44110 476 / 4e-167 Cyclin A1;1 (.1) Lus10014199 [exp] 490 / 6e-172 AT1G44110 451 / 2e-157 Cyclin A1;1 (.1) Lus10008103 [exp] 327 / 8e-107 AT5G11300 465 / 6e-162 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Lus10024822 [exp] 305 / 4e-99 AT1G47230 452 / 5e-159 CYCLIN A3;4 (.1.2) Lus10018715 [exp] 303 / 2e-98 AT1G47230 449 / 6e-158 CYCLIN A3;4 (.1.2) Lus10013886 [exp] 249 / 2e-78 AT5G43080 283 / 2e-93 Cyclin A3;1 (.1) Lus10026598 [exp] 218 / 6e-68 AT5G43080 243 / 9e-80 Cyclin A3;1 (.1) Lus10012261 [exp] 198 / 3e-57 AT1G76310 501 / 8e-176 CYCLIN B2;4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00134 [poplar] [flax] Cyclin_N Cyclin, N-terminal domain CL0065 [poplar] [flax] Cyclin PF02984 [poplar] [flax] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G080000.1 pacid=42777255 polypeptide=Potri.002G080000.1.p locus=Potri.002G080000 ID=Potri.002G080000.1.v4.1 annot-version=v4.1 ATGTCGACGCAGACACGCCGTTCGTCGTTCTCGTCTTCGACGTCGTCATCTCTTGCAAAAAGACACGCGTCTTCTTCATCAACGGATAATGTAGGGAAGG CCACGGCTGTTGCGCCTCATTTGGCCAAGAAACGAGCGCCTCTTGGTGACATTACGAATCAAAAGAATGCGACTCAAAAGGGGTCAAGAAACTCCATTCC ATCTTCTACTTTGGCACCATTCTCAAATAAAATTGCCAAGGTGAAGAAGGGACCTCCTGCTTCTAATAGCAGTGCAGGTTTCTATGGAAAAACTTTGCCT GCATCCTTAAATGCGAAATCGAGTACAGGTGGTGCTTGTAAGGTGATCTCTAACCCAAGAAGAGATGAAAATGTCACTATTGCTACTGCTGTTTCTGTTC CATGCTGCATGGATGTTTCTCCAAGTAAATCTGATGATTTTTCAATTTCTTTGGATGAATCAATGTCCACCTGTGATTCTTTTAAGAGCCCTGAAATTGA ATATATAGATAGCAATGAAATAACGGCAATTGATTCTATCAATAAGAAGACCTTGAGCAATCTATACATCTCAGATCATGTGGAAACTGCAGAAAATATG TGCATCAGAGATGCACTTGCTGATATGGAAACAGACGATAAAATTGTTAATGTTGACGACAATTACCAGGATCCGCAGCTTTGTGCAACCATTGCCTGTG ATATTTACAAGCATTTGCGTGCATCTGAGATGAAGAAAAGGCCTTCCACAGACTTCATGGAAAGAATTCAGAAAGACATAAATGCCAGCATGCGTGCAAT ACTGGTTGACTGGCTGGTCGAGGTGGCCGAAGAGTACAGGCTTGTACCTGATACATTGTATTTGACGGTGAACTACATTGATCGATATCTGTCCGGGAAT GTGATGAACAGACAAAGACTGCAGCTACTTGGTGTTGCCTGCATGATGATTGCTGCGAAATACGAGGAAATATGCGCACCCCAGGTGGAAGAGTTTTGCT ACATTACTGATAACACATATTTCAGGGATGAGGTTCTGGAAATGGAATCAACTGTTTTGAACTACTTGAAGTTCGAAATGACAGCCCCAACAGCTAAATG TTTTTTGAGGCGATTTGTTCGTGCTGCTCAAGGAATCAATGAGGTTCCATCAATGCAGTTGGAGTGCTTGGCCAACTACATCGCAGAATTATCTCTCCTG GAATATAGTATGCTTTGCTATGCTCCGTCACTGGTAGCTGCCTCTGCCATTTTCTTGGCCAAATATATACTTCTTCCTTCAAAGAGACCATGGAATTCCA CTTTGCAACATTACACACTTTATGAGCCTGTTGATTTGAGTGACTGTGTAAAGGATCTCCATCGTCTGTGTTGTGGAAACCATAATTCTACTTTACCTGC GATAAGAGAGAAATACAGTCAGCATAAGTACAAATTTGTAGCAAAGAAGTACTGCCCTCCTTCAATACCTGGGGAATTCTTCCAGAACCTAGGCTCCTAG
AA sequence Show only first row Show all	>Potri.002G080000.1 pacid=42777255 polypeptide=Potri.002G080000.1.p locus=Potri.002G080000 ID=Potri.002G080000.1.v4.1 annot-version=v4.1 MSTQTRRSSFSSSTSSSLAKRHASSSSTDNVGKATAVAPHLAKKRAPLGDITNQKNATQKGSRNSIPSSTLAPFSNKIAKVKKGPPASNSSAGFYGKTLP ASLNAKSSTGGACKVISNPRRDENVTIATAVSVPCCMDVSPSKSDDFSISLDESMSTCDSFKSPEIEYIDSNEITAIDSINKKTLSNLYISDHVETAENM CIRDALADMETDDKIVNVDDNYQDPQLCATIACDIYKHLRASEMKKRPSTDFMERIQKDINASMRAILVDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGN VMNRQRLQLLGVACMMIAAKYEEICAPQVEEFCYITDNTYFRDEVLEMESTVLNYLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYIAELSLL EYSMLCYAPSLVAASAIFLAKYILLPSKRPWNSTLQHYTLYEPVDLSDCVKDLHRLCCGNHNSTLPAIREKYSQHKYKFVAKKYCPPSIPGEFFQNLGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Potri.002G080000 [exp]	0	1
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Potri.016G033000 [exp]	2.00	0.9785
AT5G12930			unknown protein		Potri.001G017100 [exp]	3.46	0.9748
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Potri.002G010000 [exp]	4.47	0.9762
AT1G72670		IQD8	IQ-domain 8 (.1)		Potri.003G042700 [exp]	5.00	0.9725
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Potri.002G200300 [exp]	5.19	0.9758	ATCSLD5.2
AT4G28430			Reticulon family protein (.1)		Potri.017G014300 [exp]	6.48	0.9706
AT1G67820			Protein phosphatase 2C family ...		Potri.010G047600 [exp]	6.85	0.9476
AT2G38620		CDKB1;2	cyclin-dependent kinase B1;2 (...		Potri.016G142800 [exp]	7.93	0.9566	CDC2.2,CDC2.4
AT5G37010			unknown protein		Potri.012G145200 [exp]	8.83	0.9639
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Potri.009G040200 [exp]	9.38	0.9702

Compare expression of checked genes

Potri.002G080000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.