Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77405 616 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 138 / 4e-35 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 135 / 5e-34 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 132 / 3e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G46100 129 / 1e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 129 / 2e-32 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G15630 126 / 4e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G04760 123 / 4e-30 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62720 122 / 4e-30 AtNG1 novel gene 1, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G12700 122 / 1e-29 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G025600 [exp] 140 / 1e-35 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G141800 [exp] 133 / 7e-34 AT2G06000 588 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Potri.009G105600 [exp] 127 / 3e-31 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 126 / 3e-31 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.018G038300 [exp] 126 / 3e-31 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G148700 [exp] 125 / 6e-31 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075900 [exp] 125 / 1e-30 AT4G20090 806 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G124900 [exp] 125 / 2e-30 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271200 [exp] 124 / 2e-30 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029697 [exp] 670 / 0 AT1G77405 613 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042736 [exp] 665 / 0 AT1G77405 610 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 130 / 2e-32 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010410 [exp] 128 / 1e-31 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 128 / 2e-31 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 127 / 2e-31 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012139 [exp] 126 / 6e-31 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014244 [exp] 124 / 1e-30 AT1G12700 397 / 7e-130 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10015397 [exp] 120 / 2e-29 AT5G46100 593 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036238 [exp] 120 / 3e-29 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.002G080300.1 pacid=42777923 polypeptide=Potri.002G080300.1.p locus=Potri.002G080300 ID=Potri.002G080300.1.v4.1 annot-version=v4.1 ATGAATCCATCAAAACCTCTAACAAACCGAAACCAAACTTGTCTTGTAATAAACCAAGTCCTCTCCATAATGATACAAAACCGCCCATTCGACACCAAAC TCGCATCATCAACAACAAACCCAAATTTACTAACCATCGATTCAGTCTCTGATATTCTCCGATCAATACCCAGATTCTTCTTTCTTTCTCCACGTTCCAT TGGCCGCCAAAACACAGCCCGCCATCGCTCTCCATTAAAACAACGTAACCTCAAAGAAGAAACCCATAAATCCCGCCACAATGTTCTCATTCTTGGCCCA GCTGCTTATAGAGACCCCAAAAGGGTCGCTTTAGGTGTTAACAAAGCAGTTGAGTTCTTTTATTGGCTTGAAAATCACTTTAGTTTCAAACACACCGAGA TTACATGTAGAGAGATGGCCGTTGTGTTGGCAAGAGGGAGTAAATTGGATGAATTATGGCACTTTCTCAAAGAAATGGCTCAAAGAGAGCATGGGAATTG TTTAGGCCTTGTTAGTGTCAGTACCGTTACCTGTTTGATAAAAGTCCTAGGAGAGGAAGGTTTGGTTCATCAAGCATTGGCGTTGTTTTATAGATTGAAG CAATATCATTTAAAACCGGATGTTTATGCGTATAATACCCTTATTTATGCGCTTTGTCGAGTTGGGAATTTTAAAAGGGCAAGATTTTTGTTGGAACAAA TGGAGTTACCGGGATTTAGATGCCCGCCAGATATTTATACTTATACTATATTGATTAGTTCTTGTTGTAGGTATGGTTTGCAAACTGGGTGTAGAAAGGC GATACGGCGGAGGATATGGGAGGCTAATCGTTTGTTTAGGATCATGTTGTTCAAAGGTTTTGTTCCTGATGTTGTTACCTATAATTGCTTGATAAATGGA TGTTGTAAGACAAATAGGATTGAGAGGGCTCTTGAGCTTTTTGAGGATATGAATAAAAGGGGTTGTGTGCCGAACCGAGTTACTTATAATTCTTTCATCA GGTATTTTAGCATGGTGAATGAGATTGATAAGGCTGTTGAGATGTTAAGGAGGATGCAGAAGATGAATCATGGTTCGGCAACTACGAGTTCATATACTCC AATTATTCATGCTTTGTGTGAAGCAGGAAGGGTGCTAGAGGGTCGAGATTTTCTTGTTGAGTTGGTTGATGGGGGTTTGATACCGAGAGAGTATACATAT AGGTTGGTTTGTGATGCATTGAAGTCAGTGAGAGAGGGCAGTTCACTAGGTGGGGAATTTGATAAGAGAATTAAAGATGGTATAGAGGATAGATATAGAA AAGTGAAGAAAGTGAAACCAATAATGGCATGTAAGATGATGTTGTAG
AA sequence Show only first row Show all	>Potri.002G080300.1 pacid=42777923 polypeptide=Potri.002G080300.1.p locus=Potri.002G080300 ID=Potri.002G080300.1.v4.1 annot-version=v4.1 MNPSKPLTNRNQTCLVINQVLSIMIQNRPFDTKLASSTTNPNLLTIDSVSDILRSIPRFFFLSPRSIGRQNTARHRSPLKQRNLKEETHKSRHNVLILGP AAYRDPKRVALGVNKAVEFFYWLENHFSFKHTEITCREMAVVLARGSKLDELWHFLKEMAQREHGNCLGLVSVSTVTCLIKVLGEEGLVHQALALFYRLK QYHLKPDVYAYNTLIYALCRVGNFKRARFLLEQMELPGFRCPPDIYTYTILISSCCRYGLQTGCRKAIRRRIWEANRLFRIMLFKGFVPDVVTYNCLING CCKTNRIERALELFEDMNKRGCVPNRVTYNSFIRYFSMVNEIDKAVEMLRRMQKMNHGSATTSSYTPIIHALCEAGRVLEGRDFLVELVDGGLIPREYTY RLVCDALKSVREGSSLGGEFDKRIKDGIEDRYRKVKKVKPIMACKMML

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77405			Pentatricopeptide repeat (PPR)...		Potri.002G080300 [exp]	0	1
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Potri.001G217600 [exp]	1.73	0.9496
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Potri.009G037600 [exp]	3.74	0.9475	CRR2.1
AT1G55000			peptidoglycan-binding LysM dom...		Potri.005G032100 [exp]	4.58	0.9252
AT3G06200			P-loop containing nucleoside t...		Potri.008G200600 [exp]	5.74	0.9422
AT1G06440			Ubiquitin carboxyl-terminal hy...		Potri.002G245100 [exp]	6.00	0.9302
AT1G08610			Pentatricopeptide repeat (PPR)...		Potri.019G019200 [exp]	6.92	0.9035
AT3G53560			Tetratricopeptide repeat (TPR)...		Potri.006G213600 [exp]	7.93	0.9184
AT5G13270		RARE1	REQUIRED FOR ACCD RNA EDITING ...		Potri.001G066100 [exp]	9.38	0.9245
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.017G087000 [exp]	11.31	0.9076
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Potri.015G018700 [exp]	11.74	0.9254

Compare expression of checked genes

Potri.002G080300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.