Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATAF1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01720 417 / 4e-148 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G77450 334 / 6e-116 NAC ANAC032 NAC domain containing protein 32 (.1) AT5G08790 314 / 7e-108 NAC ATAF2, ANAC081 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G63790 311 / 2e-106 NAC ANAC102 NAC domain containing protein 102 (.1) AT3G15500 240 / 3e-78 NAC ATNAC3, ANAC055 NAC domain containing protein 55, NAC domain containing protein 3 (.1) AT1G52890 239 / 8e-78 NAC ANAC019 NAC domain containing protein 19 (.1) AT4G27410 237 / 3e-77 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT1G61110 233 / 2e-75 NAC ANAC025 NAC domain containing protein 25 (.1) AT3G04070 230 / 5e-74 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT3G15510 224 / 2e-71 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G180200 [exp] 529 / 0 AT1G01720 392 / 9e-139 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.007G099400 [exp] 388 / 2e-136 AT1G01720 366 / 6e-128 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.005G069500 [exp] 379 / 6e-133 AT1G01720 357 / 3e-124 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.011G123300 [exp] 243 / 4e-79 AT4G27410 354 / 2e-122 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.001G404400 [exp] 243 / 1e-78 AT3G15510 345 / 1e-117 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.011G123500 [exp] 241 / 3e-78 AT3G15510 323 / 4e-109 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.001G404100 [exp] 241 / 5e-78 AT4G27410 370 / 8e-129 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.004G038000 [exp] 239 / 1e-77 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1) Potri.011G046700 [exp] 239 / 2e-77 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025690 [exp] 434 / 1e-154 AT1G01720 405 / 1e-143 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10018142 [exp] 430 / 5e-153 AT1G01720 401 / 7e-142 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10042731 [exp] 413 / 1e-146 AT1G01720 414 / 7e-147 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10033493 [exp] 314 / 3e-107 AT5G08790 315 / 4e-108 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10020883 [exp] 311 / 2e-106 AT5G08790 320 / 6e-110 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10029692 [exp] 278 / 2e-93 AT1G01720 268 / 9e-90 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10032657 [exp] 246 / 1e-79 AT3G15510 353 / 1e-120 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10043095 [exp] 244 / 4e-79 AT3G15510 351 / 1e-119 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10018469 [exp] 239 / 2e-77 AT1G61110 301 / 5e-101 NAC domain containing protein 25 (.1) Lus10011215 [exp] 239 / 4e-77 AT1G61110 305 / 1e-102 NAC domain containing protein 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.002G081000.1 pacid=42776791 polypeptide=Potri.002G081000.1.p locus=Potri.002G081000 ID=Potri.002G081000.1.v4.1 annot-version=v4.1 ATGACGGCGGCAACATTAGAGTTACCACCAGGTTTCAGGTTCCATCCAACGGATGAGGAGCTCGTTCTGCACTATCTCTGCCGTAAATGCTCATCGCAGC CCATTGCTGTGCCTATTATTGCTGAAATTGATCTCTACAAGTTTGACCCATGGGATCTCCCCGGTATAGCCTTGTATGGAGAAAAGGAATGGTACTTTTT TACCCCGAGAGACAGGAAGTACCCTAACGGATCGAGACCGAATCGTGCTGCAGGGAGGGGCTACTGGAAAGCCACGGGAGCCGACAAGCCGATTGGGCAG CCGAAGACAGTTGGAATCAAGAAAGCTTTGGTATTTTACGCGGGGAAAGCTCCTAAGGGAGAGAAAACGAACTGGATTATGCACGAGTATCGTCTAGCCG ACGTGGATCGCTCGGCTCGCAAGAAGAACAGCTTAAGGCTGGATGATTGGGTACTCTGTCGCATATACAACAAGAAAGGTACAGTTGAGAAGCAAGAACA GCATCTTAGCGTCAAGAAAGCGAATCCGACGGAGATTGAGGAGGATGAGAAGAAGCAGGTTGTTTTGCTGCCGCCACCACAAGCTCCGTCCTCGGCGACA GGAACGGTGAATGATTACATGTACTTTGACACGTCAGACTCCGTGCCGAGGATGCACACGGATTCGAGCTGCTCGGAGCATGTGGTGTCGCCGGAATTCA CGTGCGAGGTGCAGAGTGAGCCTAGGTGGAAGGAATGGGGAAACGTAAATGCCCTCGATAATCCTTACAATTACCTGGATGCCACAATGGATATTCCATT TGCGTCTCAGTTGCAGGGGGATAATCAGATGTCGCCGCTTCAGGATATATTTATGCACCTGCAGAAGCCGTTTTGA
AA sequence Show only first row Show all	>Potri.002G081000.1 pacid=42776791 polypeptide=Potri.002G081000.1.p locus=Potri.002G081000 ID=Potri.002G081000.1.v4.1 annot-version=v4.1 MTAATLELPPGFRFHPTDEELVLHYLCRKCSSQPIAVPIIAEIDLYKFDPWDLPGIALYGEKEWYFFTPRDRKYPNGSRPNRAAGRGYWKATGADKPIGQ PKTVGIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRSARKKNSLRLDDWVLCRIYNKKGTVEKQEQHLSVKKANPTEIEEDEKKQVVLLPPPQAPSSAT GTVNDYMYFDTSDSVPRMHTDSSCSEHVVSPEFTCEVQSEPRWKEWGNVNALDNPYNYLDATMDIPFASQLQGDNQMSPLQDIFMHLQKPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Potri.002G081000 [exp]	0	1	Pt-ATAF1.2
AT5G47220	AP2_ERF	ATERF-2, ERF2, ...	ETHYLENE RESPONSE FACTOR- 2, e...		Potri.004G051700 [exp]	1.00	0.9090
AT1G80300		ATNTT1	nucleotide transporter 1 (.1)		Potri.001G175200 [exp]	3.16	0.9066	AATP1.1,PtrAATP1
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.017G009500 [exp]	8.48	0.8856
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.009G109400 [exp]	8.66	0.8942
AT3G27320			alpha/beta-Hydrolases superfam...		Potri.008G180500 [exp]	9.94	0.8986
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Potri.005G180200 [exp]	12.32	0.8956	Pt-ATAF1.1
AT1G76250			unknown protein		Potri.002G011400 [exp]	14.45	0.8815
AT5G10490		MSL2	MSCS-like 2 (.1.2.3)		Potri.007G011100 [exp]	15.19	0.8887
AT3G57810			Cysteine proteinases superfami...		Potri.010G234300 [exp]	15.62	0.8371
AT3G18690		MKS1	MAP kinase substrate 1 (.1)		Potri.007G110100 [exp]	16.24	0.8815

Compare expression of checked genes

Potri.002G081000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.