Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21730 1062 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G12020 856 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G06670 846 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G39050 672 / 0 Kinesin motor family protein (.1) AT2G21380 663 / 0 Kinesin motor family protein (.1) AT3G10180 320 / 2e-91 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G59540 288 / 1e-82 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G21300 276 / 3e-78 ATP binding microtubule motor family protein (.1.2) AT1G18370 277 / 6e-78 HIK, ATNACK1 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) AT5G66310 278 / 1e-77 ATP binding microtubule motor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G060400 [exp] 980 / 0 AT3G12020 1281 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G194900 [exp] 936 / 0 AT3G12020 1278 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G122100 [exp] 678 / 0 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1) Potri.004G161100 [exp] 672 / 0 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.006G040700 [exp] 333 / 1e-95 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G136600 [exp] 294 / 5e-84 AT3G43210 1250 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Potri.002G027600 [exp] 286 / 2e-81 AT2G21300 722 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.014G013300 [exp] 280 / 6e-80 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G014800 [exp] 281 / 4e-79 AT5G66310 868 / 0.0 ATP binding microtubule motor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018145 [exp] 1438 / 0 AT1G21730 1033 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025688 [exp] 1437 / 0 AT1G21730 1042 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017969 [exp] 852 / 0 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1) Lus10016236 [exp] 827 / 0 AT3G12020 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10029307 [exp] 822 / 0 AT3G12020 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10041958 [exp] 749 / 0 AT4G39050 1202 / 0.0 Kinesin motor family protein (.1) Lus10017496 [exp] 515 / 3e-165 AT4G39050 1235 / 0.0 Kinesin motor family protein (.1) Lus10028790 [exp] 475 / 2e-148 AT4G39050 1242 / 0.0 Kinesin motor family protein (.1) Lus10012103 [exp] 323 / 3e-92 AT3G10180 1271 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010441 [exp] 320 / 8e-92 AT3G10180 1214 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.002G081300.10 pacid=42777204 polypeptide=Potri.002G081300.10.p locus=Potri.002G081300 ID=Potri.002G081300.10.v4.1 annot-version=v4.1 ATGTCATTTAGTAGGTCCCAACGGTCATCCGCCATCTCGCCGTTCCGTTCGCGGAAGTCACCGGCGCAACCTCCGCCTCCGGCTCCGAAGCCCACCGGAC GGCCGTTAACTCCTTCCTCGACGACCTCGTCGAGGCCTCCCTCGAGACTGTCAAGCTCTGCAGCTAGTTCGGGCCCAAGCCCAACGCCTCATGACCAGCC TGAAACCAGCCGGAGCAAGGAAAACGTGACTGTCACAGTCAGGTTCCGCCCTCTCAGTGCTAGGGAAATTAATAAAGGAGACGAGATAGCATGGTATGCC GATGGAGATTCGACAGTGAGAAACGAGTACAATCCTTCAATTGCTTATGGTTTTGATAAAGTATTTGGTCCGGCAACCACAACGCGCCATGTTTATGATA TTGCAGCCGAGCATGTGGTTGGTGGTGCAATGAAAGGGATTAATGGGACTGTTTTTGCATATGGTGTTACTAGCAGTGGCAAGACTCATACAATGCATGG AGAGCAAAAGTCACCTGGAATTATTCCGTTGGCAGTGAAGGATGTGTTTGGAATTATACAAGAGACACCTGGGCGAGAATTTCTTCTTCGTGTTTCATAT TTAGAAATTTACAATGAGGTTATCAATGATTTGCTTAATCCAATGGGGCAGAATCTAAGAATACGAGAGGATGCTCAGGGAACATATGTCGAGGGAATCA AAGTAGAAGTTGTTTTGTCACCTGCTCATGCTCTTTCCTTGATAGCATCTGGAGAAGAGCACAGGCATGTGGGTTCTAATAATTTCAATCTTCTAAGCAG TCGAAGCCACACAATTTTCACCCTGACTATTGAAAGCAGTCCATGTGGGGAATATCAAGGGGAAGAAGATGTGACTTTGTCCCAATTGAACTTAATTGAT CTTGCAGGATCTGAAAGTTCTAAAACTGAAACAACTGGATTAAGGAGAAAAGAGGGTTCATACATAAACAAAAGCTTGCTTACTCTTGGCACAGTTATTT CTAAATTAACAGATGAAAAAGCAACTCACGTTCCATATCGAGATTCAAAACTCACCCGTTTATTGCAGTCATCTCTCAGTGGCCATGGACGTGTCTCTCT TATATGCACAGTGACACCTGCCTCTAGCAACAGTGAAGAGACACACAATACACTTAAGTTTGCTCACAGGAGCAAGCAAGTGGAAATCAAGGCTTCTCAG AATAAGATTATGGATGAGAAATCTCTCATTAAAAAGTACCAGAAGGAAATTTCCTGTTTAAAGCAAGAGCTTCATCAATTAAGGCGTGGAATGATGGAGA GTCCTTATATGGCTGCATCTACCCAAGAAGATCTTGTTAATTTGAAGCTTCAGCTGGAAGCTGGTCAGGTCAAATTACAGTCACGATTGGAAGAGGAGGA ACAAGCCAAGGCAGCTTTAATGGGAAGAATTCAGCGATTGACCAAGCTCATCTTAGTTTCCACAAAAAATTCCATGCAATCAAGTCTACCTGAAAGATCT GATCATATAAGAAGGCATTCATTTGGGGAAGATGAGCTGGCATATTTGCCGGATAGGAAAAGGGAATACATGACAGAAGAAGATGCTGGAAGCTATGCTT CTGAGCTTTCTGTAGAAGGAAGAGATGAGATTACTAATCTAGATGAGTTGGTGAAGGATTTTAAACGAAACAGGAGGCGGGGGATGCTTGGCTGGTTTAA ACTGAAGAAGCCAGAGAATCCAGTAGGGTCGTCACCTAGTACAGATAGTGAGAGCTCTGCTGGTGGATCACCTGCCTCCCGTTCCAAATTGTCACAAAAT AGGGTCACATTCAATGATATAAAAGATGGAAAGAGAAAATCTATCAGTAGGAAGGGAGATGAAACTACAATCATTGATTCATTTCCAGAAAGAACACAAG CTGGTGACCTGTTTAGTGCTACTATTGGAGGTCGCCGATTGCCTCCGACTGGTACCACAATAACGGATCAAATGGATCTTCTTCGTGAGCAGGTGAAAAT GTTAGCTGGGGAGGTGGCATTGTGTACTAGCTCTCTGAAGAGACTTTCAGAGCAAGCAGCTAGCAACCCTGAAAATTTACAGCTGAAGGAACAAATGCAA AAGTTGAAAGCTGAAATTAGTGAAAAGAAGCATCAGATGCATGTTCTAGAGCGACGCATGATTGGATCAGTTGAAATGACGTCAAACACATCTACCAGCA TTGAAATGCCAAAGGCTTTATCCAAGCTCACTACTCAGCTCAATGAAAAAACATTTGAACTTGAGATTAAGTCAGCAGACAATAGGATACTTCAGGAGCA ACTGCAGATTAAGATATCAGAGAACACTGAGATGCAGGAGACAATTCTTCTGCTGCGGCAACAGCTAAATTCATTATCAGAAAAAAGCTCCAGCAAACAG AGAATTGCTGAATCTGAGTCTACCACACACAGAAAGAGCAAAGAAGGGAGGAACGAGATTTGGTCATTTGAAGAAATTTATGCTGATGAAAACACACCAA AAAGTGTCATGAGTTTGAATCAAATATTTTCCCAAGATGACCCCAAAGAGCGCAATGGCACTAGTTTATTGAATTCTCAAGTTCTAATACAGGCTTCTGA GATAGAGAATCTGAAGCAAGAGAAGGTGAAGCTGATTGAAGAAAAGGATGGACTTGAAATTCAAAGCCAAAAACTGGCAGAGGAAGCATCGTATGCAAAA GAATTGGCGGCTGCTGCTGCAGTTGAGCTGCGAAATTTGGCTGAAGAAGTAACCAAGCTGTCTTATGAAAATGCGAAGCTGTCCGGTGATCTGGCTGCTG CAAAAGAGACACAATGCAGATCTAACTGTTGTCAGAGGTCCATTTCATATGATTTTACACAAAGTAACTCCATTGGTTCTCTACCTGACGGACGCATTAG AAAAACTGAGGATAGTCTTTTGGTTGGGGAGTTGCAGAAGGAACTAAATGAAAGATACCAAAGAGAAGCTTCATTGGAAATGGCACTTTCTGAGAGAAAC AAGGTAGAAGGTGAGCTACGAAAACAACTTGATGAAGCAAAACATCATGAAGAAGATTTGGAAAACGAGCTTGCCAATATGTGGGTGCTGGTTGCAAAGA TGAGAAAGTCTGGTGTTAATGCTGAGGACATGCCATCTGAAGGGGTCTATGCATCTACCACTTTTGGAGCAGGTCTTAAAAGTGGATTTCTGCTATCTAA TGGTCATTCTTCTAGAATATCCAAAGATGAAACCTTTGAAAACATTGATGGGATGAAGACATTAGAAGAGTTGAAAGTAAGCTATCAGAAAGAGAGAAGA AAATGCAAACAGCTAGAAAGCATTATTTCAAGATTGAAGGTTGAAGACATAGATGGTCTGGATGTCACAGCTCTTGAAGATCTACAGAATTTTCACGTCG AAGCCATAACTAAAATCTGCCATGCAAAGTGTGCAAATCGTGCCTGA
AA sequence Show only first row Show all	>Potri.002G081300.10 pacid=42777204 polypeptide=Potri.002G081300.10.p locus=Potri.002G081300 ID=Potri.002G081300.10.v4.1 annot-version=v4.1 MSFSRSQRSSAISPFRSRKSPAQPPPPAPKPTGRPLTPSSTTSSRPPSRLSSSAASSGPSPTPHDQPETSRSKENVTVTVRFRPLSAREINKGDEIAWYA DGDSTVRNEYNPSIAYGFDKVFGPATTTRHVYDIAAEHVVGGAMKGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFGIIQETPGREFLLRVSY LEIYNEVINDLLNPMGQNLRIREDAQGTYVEGIKVEVVLSPAHALSLIASGEEHRHVGSNNFNLLSSRSHTIFTLTIESSPCGEYQGEEDVTLSQLNLID LAGSESSKTETTGLRRKEGSYINKSLLTLGTVISKLTDEKATHVPYRDSKLTRLLQSSLSGHGRVSLICTVTPASSNSEETHNTLKFAHRSKQVEIKASQ NKIMDEKSLIKKYQKEISCLKQELHQLRRGMMESPYMAASTQEDLVNLKLQLEAGQVKLQSRLEEEEQAKAALMGRIQRLTKLILVSTKNSMQSSLPERS DHIRRHSFGEDELAYLPDRKREYMTEEDAGSYASELSVEGRDEITNLDELVKDFKRNRRRGMLGWFKLKKPENPVGSSPSTDSESSAGGSPASRSKLSQN RVTFNDIKDGKRKSISRKGDETTIIDSFPERTQAGDLFSATIGGRRLPPTGTTITDQMDLLREQVKMLAGEVALCTSSLKRLSEQAASNPENLQLKEQMQ KLKAEISEKKHQMHVLERRMIGSVEMTSNTSTSIEMPKALSKLTTQLNEKTFELEIKSADNRILQEQLQIKISENTEMQETILLLRQQLNSLSEKSSSKQ RIAESESTTHRKSKEGRNEIWSFEEIYADENTPKSVMSLNQIFSQDDPKERNGTSLLNSQVLIQASEIENLKQEKVKLIEEKDGLEIQSQKLAEEASYAK ELAAAAAVELRNLAEEVTKLSYENAKLSGDLAAAKETQCRSNCCQRSISYDFTQSNSIGSLPDGRIRKTEDSLLVGELQKELNERYQREASLEMALSERN KVEGELRKQLDEAKHHEEDLENELANMWVLVAKMRKSGVNAEDMPSEGVYASTTFGAGLKSGFLLSNGHSSRISKDETFENIDGMKTLEELKVSYQKERR KCKQLESIISRLKVEDIDGLDVTALEDLQNFHVEAITKICHAKCANRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21730			P-loop containing nucleoside t...		Potri.002G081300 [exp]	0	1
AT5G05160		REDUCED IN LATE...	REDUCED IN LATERAL GROWTH1, Le...		Potri.001G209700 [exp]	1.41	0.8815
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.012G137500 [exp]	5.09	0.8441
AT5G46570		BSK2	BR-signaling kinase 2 (.1)		Potri.014G179300 [exp]	7.07	0.8566
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060900 [exp]	8.24	0.8809
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Potri.011G049400 [exp]	9.16	0.8793
AT5G13230			Tetratricopeptide repeat (TPR)...		Potri.001G062566 [exp]	10.67	0.8515
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.005G234300 [exp]	12.96	0.8443
AT4G38440		IYO	MINIYO, unknown protein		Potri.009G139900 [exp]	16.94	0.8504
AT4G23840			Leucine-rich repeat (LRR) fami...		Potri.001G092000 [exp]	18.46	0.8235
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Potri.018G118800 [exp]	19.18	0.8415

Compare expression of checked genes

Potri.002G081300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.