Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44130 450 / 8e-157 Eukaryotic aspartyl protease family protein (.1) AT1G77480 435 / 6e-150 Eukaryotic aspartyl protease family protein (.1.2) AT4G33490 370 / 2e-125 Eukaryotic aspartyl protease family protein (.1.2) AT1G49050 284 / 2e-89 Eukaryotic aspartyl protease family protein (.1.2) AT5G43100 129 / 4e-32 Eukaryotic aspartyl protease family protein (.1) AT1G65240 126 / 1e-31 Eukaryotic aspartyl protease family protein (.1) AT2G36670 118 / 9e-29 Eukaryotic aspartyl protease family protein (.1.2) AT3G50050 115 / 3e-27 Eukaryotic aspartyl protease family protein (.1) AT5G22850 114 / 3e-27 Eukaryotic aspartyl protease family protein (.1) AT5G36260 114 / 3e-27 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G179900 [exp] 718 / 0 AT1G44130 501 / 2e-177 Eukaryotic aspartyl protease family protein (.1) Potri.005G069600 [exp] 352 / 4e-118 AT4G33490 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.007G099200 [exp] 342 / 5e-114 AT4G33490 521 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.007G099301 [exp] 327 / 3e-108 AT4G33490 503 / 6e-178 Eukaryotic aspartyl protease family protein (.1.2) Potri.015G053300 [exp] 282 / 8e-89 AT1G49050 611 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.019G054900 [exp] 129 / 1e-32 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G020200 [exp] 124 / 2e-30 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G118800 [exp] 123 / 2e-30 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.001G213600 [exp] 119 / 5e-29 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025687 [exp] 467 / 5e-163 AT1G77480 463 / 5e-162 Eukaryotic aspartyl protease family protein (.1.2) Lus10018146 [exp] 460 / 2e-160 AT1G77480 460 / 1e-160 Eukaryotic aspartyl protease family protein (.1.2) Lus10033503 [exp] 371 / 2e-125 AT4G33490 560 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10020874 [exp] 369 / 9e-124 AT4G33490 563 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10042982 [exp] 268 / 2e-83 AT1G49050 569 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10032485 [exp] 217 / 2e-64 AT1G49050 475 / 6e-163 Eukaryotic aspartyl protease family protein (.1.2) Lus10018148 [exp] 184 / 3e-54 AT1G44130 227 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10036430 [exp] 120 / 3e-29 AT3G02740 550 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10024792 [exp] 119 / 1e-28 AT5G43100 839 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027732 [exp] 118 / 1e-28 AT2G36670 634 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF14543 [poplar] [flax] TAXi_N Xylanase inhibitor N-terminal
Representative CDS sequence Show only first row Show all	>Potri.002G081400.1 pacid=42777491 polypeptide=Potri.002G081400.1.p locus=Potri.002G081400 ID=Potri.002G081400.1.v4.1 annot-version=v4.1 ATGGAAAAGAAAAGGAAAAGAATCGTATCATTGGTGACGATGACGCTCTTGTTCTTTATAGTAATGGCTGCTAATTTTCGAGGTTGCTTCTCTGCTGCCA GTCAAACACCCATCAAAGGAAAGTCAACCACGCCTGCTAATGATCGAGTTGGCTCCTCTGTTTTCTTTCGTGTCACCGGAAATGTCTATCCTACTGGGCA CTACTCTGTGATTCTGAACATAGGCAACCCACCAAAGGCTTTTGACTTGGATATTGATACTGGTAGTGATCTCACCTGGGTCCAATGTGATGCTCCTTGC AAAGGTTGCACTAAGCCTCTTGATAAACTTTACAAGCCAAAGAACAATCGTGTGCCTTGTGCAAGTTCCTTGTGCCAGGCCATACAAAACAACAATTGCG ACATCCCAACTGAGCAGTGTGACTATGAAGTCGAGTATGCTGATCTTGGTTCATCTCTTGGCGTGCTGCTGTCGGACTACTTTCCGCTACGATTAAACAA TGGATCTCTTCTCCAACCTAGAATCGCCTTTGGGTGTGGATATGATCAAAAATATCTTGGCCCACACTCACCGCCTGACACAGCTGGGATTCTTGGCCTT GGCAGAGGGAAAGCAAGCATTCTTTCGCAGCTACGAACCCTGGGTATCACGCAAAATGTGGTTGGCCACTGTTTCAGTAGGGTAACAGGTGGCTTTTTAT TCTTTGGAGATCACCTTTTGCCGCCTTCAGGAATCACTTGGACTCCAATGCTACGCAGTTCCTCAGACACGCTATACTCGTCAGGACCAGCAGAACTACT TTTTGGTGGAAAGCCCACTGGCATTAAGGGACTACAGCTGATTTTTGACAGCGGGAGCTCCTATACCTACTTCAATGCTCAAGTTTACCAGAGTATACTT AATCTGGTGAGGAAGGATCTTAGTGGAATGCCATTAAAAGATGCACCGGAGGAGAAGGCACTTGCAGTGTGCTGGAAAACTGCTAAACCGATCAAATCTA TTCTTGACATCAAGAGTTTTTTCAAGCCCTTAACCATAAACTTTATAAAAGCAAAGAATGTGCAGCTGCAGTTGGCACCTGAGGACTACCTCATTATCAC TAAAGATGGGAATGTGTGCTTAGGGATTCTGAACGGCGGTGAGCAAGGCCTGGGAAACCTCAATGTGATAGGAGACATTTTTATGCAAGACAGAGTGGTG GTTTATGACAATGAGAGACAGCAGATTGGATGGTTCCCAACAAATTGCAATAGACTTCCCAACGTGGATCGTGAATATAATGAAGGTTTTTCCCAGCCTT ATGCGGCCTACTTTGGTATCCTAGAGGAGCATTGTCCTGCAACCTATGCTTCTGAGAAGACCAAACTTTTCACCAAAAAATAG
AA sequence Show only first row Show all	>Potri.002G081400.1 pacid=42777491 polypeptide=Potri.002G081400.1.p locus=Potri.002G081400 ID=Potri.002G081400.1.v4.1 annot-version=v4.1 MEKKRKRIVSLVTMTLLFFIVMAANFRGCFSAASQTPIKGKSTTPANDRVGSSVFFRVTGNVYPTGHYSVILNIGNPPKAFDLDIDTGSDLTWVQCDAPC KGCTKPLDKLYKPKNNRVPCASSLCQAIQNNNCDIPTEQCDYEVEYADLGSSLGVLLSDYFPLRLNNGSLLQPRIAFGCGYDQKYLGPHSPPDTAGILGL GRGKASILSQLRTLGITQNVVGHCFSRVTGGFLFFGDHLLPPSGITWTPMLRSSSDTLYSSGPAELLFGGKPTGIKGLQLIFDSGSSYTYFNAQVYQSIL NLVRKDLSGMPLKDAPEEKALAVCWKTAKPIKSILDIKSFFKPLTINFIKAKNVQLQLAPEDYLIITKDGNVCLGILNGGEQGLGNLNVIGDIFMQDRVV VYDNERQQIGWFPTNCNRLPNVDREYNEGFSQPYAAYFGILEEHCPATYASEKTKLFTKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G44130			Eukaryotic aspartyl protease f...		Potri.002G081400 [exp]	0	1
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.017G017800 [exp]	2.44	0.8444
AT2G19710			Regulator of Vps4 activity in ...		Potri.006G149800 [exp]	6.48	0.8415
AT2G39720		RHC2A	RING-H2 finger C2A (.1)		Potri.010G201300 [exp]	9.53	0.7376
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Potri.010G043800 [exp]	13.85	0.8185
AT3G48990			AMP-dependent synthetase and l...		Potri.001G105900 [exp]	15.32	0.8198
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Potri.005G200100 [exp]	15.49	0.8359
AT2G46080			unknown protein		Potri.008G085600 [exp]	17.08	0.8252
AT4G02350		SEC15B	exocyst complex component sec1...		Potri.002G203200 [exp]	21.84	0.7589
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Potri.003G115800 [exp]	23.81	0.7889	KEU.1
AT1G16670			Protein kinase superfamily pro...		Potri.001G438400 [exp]	27.23	0.8169

Compare expression of checked genes

Potri.002G081400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.