Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	UBP26.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49600 1250 / 0 SUP32, ATUBP26, UBP26 ubiquitin-specific protease 26 (.1) AT2G22310 127 / 3e-31 ATUBP4 ubiquitin-specific protease 4 (.1.2) AT5G06600 130 / 2e-30 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT3G11910 129 / 4e-30 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT4G39910 122 / 8e-30 ATUBP3 ubiquitin-specific protease 3 (.1) AT4G31670 113 / 1e-25 UBP18 ubiquitin-specific protease 18 (.1) AT2G24640 107 / 8e-24 UBP19 ubiquitin-specific protease 19 (.1.2) AT5G57990 107 / 3e-23 UBP23 ubiquitin-specific protease 23 (.1) AT3G14400 104 / 8e-23 UBP25 ubiquitin-specific protease 25 (.1) AT4G24560 100 / 5e-21 UBP16 ubiquitin-specific protease 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G179500 [exp] 1898 / 0 AT3G49600 1245 / 0.0 ubiquitin-specific protease 26 (.1) Potri.010G245100 [exp] 129 / 7e-30 AT5G06600 1907 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.008G012600 [exp] 128 / 1e-29 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.016G064100 [exp] 127 / 1e-29 AT5G06600 1943 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.006G198300 [exp] 123 / 3e-28 AT5G06600 1954 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.007G093600 [exp] 110 / 9e-26 AT4G39910 679 / 0.0 ubiquitin-specific protease 3 (.1) Potri.006G270600 [exp] 112 / 3e-25 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.005G074900 [exp] 106 / 3e-24 AT4G39910 678 / 0.0 ubiquitin-specific protease 3 (.1) Potri.018G009500 [exp] 108 / 6e-24 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042726 [exp] 1396 / 0 AT3G49600 1296 / 0.0 ubiquitin-specific protease 26 (.1) Lus10029686 [exp] 1357 / 0 AT3G49600 1255 / 0.0 ubiquitin-specific protease 26 (.1) Lus10043456 [exp] 131 / 1e-30 AT5G06600 1925 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10034130 [exp] 130 / 3e-30 AT3G11910 1888 / 0.0 ubiquitin-specific protease 13 (.1.2) Lus10008949 [exp] 129 / 4e-30 AT5G06600 1904 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10029309 [exp] 127 / 2e-29 AT5G06600 1957 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10041705 [exp] 108 / 5e-25 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1) Lus10024043 [exp] 108 / 5e-25 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1) Lus10035825 [exp] 111 / 1e-24 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10036607 [exp] 110 / 2e-24 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF13423 [poplar] [flax] UCH_1 Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Potri.002G081600.1 pacid=42777020 polypeptide=Potri.002G081600.1.p locus=Potri.002G081600 ID=Potri.002G081600.1.v4.1 annot-version=v4.1 ATGTCTCCACCAGCGACGCGTGGTAAAAATAAAAGGAATAGACAGGGCGACAATGTTAATATCACCTCTGAAATATTAAGGAAAATTCATGCAAGTGGTC GAGTAACTGATGGTGATGTAAATCAGCTGTACATGATATGGAAGCCAGTTTGTCAAGGCTGTCGTGTGAATACCAAGGACAACCCCAACTGCTTTTGTGG TTTGATTCCACCACCCAGTGGAAGTCGTAAATCTGGCTTATGGCAGAAAATGCCTGATATTCTTCAAGCACTTGGATCAGACCCAGTCAAAGATCTTCGT AATACGGATGAAACTCCTGCTGGTCTAACAAATCTGGGAGCAACATGCTATGCCAACAGTGTACTCCAGTGTCTGTACATGAATGCCTCATTCCGAGAAA TTGTTTTCTCTGTTGAACCAGATTTGTTAAATGAACAGCCTGTGCTAAATCAGTTTGCCCGGCTTTTTGCACAGTTGCATGCTAGTAAAATGGCTGTTAT TGATCCAGCTCCATTTATAATGACCTTGGAGTTAGATAATGCAGTTCAGCAGGATGGCCATGAGTTCCTGACCTTGCTTCTTTCACTGCTTGAACGCTGT CTGAACAACTCTAAAATTTCTAAGGTGAAAACAGTTGTTCAAGATCTTTTTCGAGGAAGTGTGTCTCAAGTAACAACGTGCTCAAATTGTGGAAGAGATT CTGATGCATCTTCCAAAACCGAAGACTTCTACGAGCTGGAGTTGAATGTCAAAGGCTTGAAAAGCTTAGATGAGAGTTTGGATCAGTACCTTAGTGTGGA ACAGCTTCATGGAGAGAATCAATACAATTGTGAATTGTGTAAAAGCACTGTAGATGCCACTCACCGCATCAGGCTACGAACACTTCCTGATGTTCTTAAT TTTCAGCTTAAGCGTTATGAGTTCCTTCCGAAGACTACTACAAGGAAGAAAATCACATCTGCATTTGGTTTCCCTGGAGAATTGGACATGGGGCTGAGAC TGTCTGAACCTTCTCAGCTGGAATGGATATATGACCTGTCAGCTGTGTTGATTCACAAGGGAACTGCTGTAAATAGTGGCCATTACATTGCTCATATCAA GGATGAGAATACAGGGCAGTGGTGGGTTTTTGATGACGAGCATGTCTCAAATCTAGGTCATCGTCCATTTGGAGAAGGCTCTTCAAGTTCTACTGCTAAA GTTGTTCATAATGACACTGTTTTGCCATCTTGTGCTGGAGCAACACCCGCTGATACCAGCAGAAGTAGTGTAGATGCTGTTCTGCCACAGTCTTTAGAAT CTAATGTTGGTAGTCATAAAGAGAGTTTTTCATCTATTGATGCATACAGACTGATGTATAATCTTAAGCGCACTAGAAAGAATGATGATAAAAGAAATCA TATTGCAAACATTATTCAATTAGAAGGTCACAAGGGTTTACACAATGGCTTTCATCTTCCACCTCATCTCTCTGAGGATATAAAGGATGTGAATGCAGTA TATCTTGCTGTTTGTGAAGAGTACAAATTGAAGAAGGAAAGAGAGGTGCATCATGTAGCAGAACGGAGGCAAGAAGTGCGATCAATTCTTTCAGAAGCTC CTGTCCGGTCGCTTGAAGAACCGTTTTATTGGGTTTCTACAGCCTGGCTTCGCCAGTGGGCGGACAACGTCATTCCAGGTGCTATAGACAACAAACCTAT CCAATGCTCACATGGAGAAGTCCCAGTGTCTAAAGTTGGGTCCATGAAGCGGCTGTCTGTCAAGACTTGGGGAATCTTGTTCTCTAAGTATGATGGAGGG CCAGCACTGAGCAACAGCAACTGCTGCATGACTTGCCTTATTGATAGTGCTCAATCTGTGGTCTCTGCTGATAGCTATAGGGATCAGAGAACATTAATGA GAGATCTTGCAAACGATGTAATTACTAAGAAATGTTCAGATGGAACATATTTTGTGTCTAAGACATGGCTGCAACAGTGGGTGAGAAGAAAAAATATCGA TGCTCCTAGCGAAGCCGATGCAGGACCAACTGCTTCAATTAGGTGTCGACATGGGCAACTGAGGCCTAAGCAAACTGGTGCCAAGCGATTGCTGGTTCCT GAGAAACTTTGGCTCTTTTTGTATAAGGATGCGGTTGCTGTAAAACCTGATGATCCACTGGGATGCACAACTTTTCCTTCAGATTCTGAACTCTGTCCTG AATGCAGCGATGAACTTTCTGAAGTTGCCTGCTTCGAGGATTCTATAAGGGAGATGAAGCTCAAACATCGCCAAAATCATGAAAGGTTGGCTACTGGAAA GAGTATTCCCCTGTCTTTGAACTGCACGTATTACCTGATGCCTTCTTCATGGCTCACAAAATGGAGAAACTACACGAGTGCAAGTGGCAAGAATACTTCA TCAGTGGAACCTGAAGTTCTTGATCCTGTTATTGATGCACTGAAATGTGAACAGCATTCCCGACTCCTAGAAAGGCCTCCTTACCTGATGAACAAACGTG GCATGCTTATACAGAAGAGTTCTTCTACAGATGCTTTAACAATCATTACAGAGAATGACTGGAACAGTTTCTGTGAAGAGTGGGGCGGCAACAAGGAGAA AGGCATAATGGCAATAATTGAGTCCAGCGATGTCACAGAAAGTAATTTGAGTGGGTGCAGAGAAGACGTGTCACTATGTAAAGACCATCCAAGTTCTCAA GATGAAGCAAGTAATGGCCCTGAGATCAGACAGCCTGTAATTAGGACCTCTCCAGAGATTTGTGAGGATTGCATTGGTGAACGAAAAAGTCATGAGTTGG CAAAGAAGCTGAATTACTTCAATGAGGACATAAGTGTATCTCTTGTGCGTGGTAAGGAAGCTCCAAGATCGATTTTAGAAGCTTCTTCAGCCACTTCTGA GACAGATCGGCGGGCCTCCAAGCGACCTCGAAAGACCAGCTATGGGACTTCAGTAAATCTAAAAGTTTCTGGTTCCACATCATTATACCGGTTAAAAATG ATGATATGGGAATCGCTTGGGGTGGTTAAGGAGAACCAGATACTTCACAAAGGTTCGGTGATTATTGATCAGGAAAGTGCTACGCTTGCAGACTTGAGTA TATTTCCTGGTGACAAGCTATGGGTGCAAGATTCTGAAATCCACGAGCATAGAGATATTGCTGATGAGATTGCTGACCAGAAAGCAAATGCACAAGATCC CGAGAAAGGGTTTTGGGGAACACTTTTGACTACAACTACTGCATCCCCAGTTGTTTAA
AA sequence Show only first row Show all	>Potri.002G081600.1 pacid=42777020 polypeptide=Potri.002G081600.1.p locus=Potri.002G081600 ID=Potri.002G081600.1.v4.1 annot-version=v4.1 MSPPATRGKNKRNRQGDNVNITSEILRKIHASGRVTDGDVNQLYMIWKPVCQGCRVNTKDNPNCFCGLIPPPSGSRKSGLWQKMPDILQALGSDPVKDLR NTDETPAGLTNLGATCYANSVLQCLYMNASFREIVFSVEPDLLNEQPVLNQFARLFAQLHASKMAVIDPAPFIMTLELDNAVQQDGHEFLTLLLSLLERC LNNSKISKVKTVVQDLFRGSVSQVTTCSNCGRDSDASSKTEDFYELELNVKGLKSLDESLDQYLSVEQLHGENQYNCELCKSTVDATHRIRLRTLPDVLN FQLKRYEFLPKTTTRKKITSAFGFPGELDMGLRLSEPSQLEWIYDLSAVLIHKGTAVNSGHYIAHIKDENTGQWWVFDDEHVSNLGHRPFGEGSSSSTAK VVHNDTVLPSCAGATPADTSRSSVDAVLPQSLESNVGSHKESFSSIDAYRLMYNLKRTRKNDDKRNHIANIIQLEGHKGLHNGFHLPPHLSEDIKDVNAV YLAVCEEYKLKKEREVHHVAERRQEVRSILSEAPVRSLEEPFYWVSTAWLRQWADNVIPGAIDNKPIQCSHGEVPVSKVGSMKRLSVKTWGILFSKYDGG PALSNSNCCMTCLIDSAQSVVSADSYRDQRTLMRDLANDVITKKCSDGTYFVSKTWLQQWVRRKNIDAPSEADAGPTASIRCRHGQLRPKQTGAKRLLVP EKLWLFLYKDAVAVKPDDPLGCTTFPSDSELCPECSDELSEVACFEDSIREMKLKHRQNHERLATGKSIPLSLNCTYYLMPSSWLTKWRNYTSASGKNTS SVEPEVLDPVIDALKCEQHSRLLERPPYLMNKRGMLIQKSSSTDALTIITENDWNSFCEEWGGNKEKGIMAIIESSDVTESNLSGCREDVSLCKDHPSSQ DEASNGPEIRQPVIRTSPEICEDCIGERKSHELAKKLNYFNEDISVSLVRGKEAPRSILEASSATSETDRRASKRPRKTSYGTSVNLKVSGSTSLYRLKM MIWESLGVVKENQILHKGSVIIDQESATLADLSIFPGDKLWVQDSEIHEHRDIADEIADQKANAQDPEKGFWGTLLTTTTASPVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49600		SUP32, ATUBP26,...	ubiquitin-specific protease 26...		Potri.002G081600 [exp]	0	1	UBP26.1
AT2G01460			P-loop containing nucleoside t...		Potri.008G130200 [exp]	1.00	0.8880
AT1G02890			AAA-type ATPase family protein...		Potri.002G205900 [exp]	2.82	0.8053
AT4G04920		AtSFR6, SFR6	sensitive to freezing 6 (.1.2)		Potri.004G040400 [exp]	6.92	0.7996
AT2G16950		ATTRN1	transportin 1 (.1.2)		Potri.004G177700 [exp]	9.59	0.7366
AT1G58250		SAB	SABRE, Golgi-body localisation...		Potri.002G110700 [exp]	13.07	0.7662	SAB.2
AT2G01130			DEA(D/H)-box RNA helicase fami...		Potri.010G117800 [exp]	13.96	0.8022
AT5G24350			unknown protein		Potri.012G020000 [exp]	17.49	0.7730
AT5G24350			unknown protein		Potri.015G008500 [exp]	19.18	0.7690
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Potri.008G081200 [exp]	20.49	0.7768
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Potri.016G096500 [exp]	23.87	0.7492

Compare expression of checked genes

Potri.002G081600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.