Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ALDH3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44170 730 / 0 ALDH4, ALDH3H1 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) AT4G34240 640 / 0 ALDH3I1 aldehyde dehydrogenase 3I1 (.1.2) AT4G36250 466 / 3e-161 ALDH3F1 aldehyde dehydrogenase 3F1 (.1) AT3G66658 181 / 2e-50 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT1G74920 155 / 7e-42 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT1G79440 149 / 2e-39 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT1G23800 143 / 4e-37 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT3G48000 141 / 3e-36 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT3G48170 139 / 9e-36 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT3G24503 120 / 4e-29 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G179300 [exp] 895 / 0 AT1G44170 736 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Potri.005G069800 [exp] 667 / 0 AT4G34240 626 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.001G412900 [exp] 665 / 0 AT4G34240 678 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.001G259100 [exp] 486 / 2e-169 AT4G36250 556 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.007G017100 [exp] 478 / 2e-166 AT4G36250 635 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.008G106000 [exp] 172 / 3e-47 AT3G66658 1049 / 0.0 aldehyde dehydrogenase 22A1 (.1.2) Potri.012G075600 [exp] 150 / 9e-40 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.015G070600 [exp] 147 / 2e-38 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.010G174000 [exp] 144 / 2e-37 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029684 [exp] 770 / 0 AT1G44170 742 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10025681 [exp] 746 / 0 AT1G44170 743 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10018153 [exp] 740 / 0 AT1G44170 734 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10015688 [exp] 638 / 0 AT4G34240 674 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Lus10037694 [exp] 627 / 0 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10042724 [exp] 611 / 0 AT1G44170 605 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10002557 [exp] 481 / 3e-159 AT3G12080 869 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10031280 [exp] 458 / 3e-158 AT4G36250 555 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10031849 [exp] 454 / 1e-156 AT4G36250 550 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10041806 [exp] 444 / 1e-152 AT4G36250 640 / 0.0 aldehyde dehydrogenase 3F1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [poplar] [flax] ALDH-like PF00171 [poplar] [flax] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Potri.002G081800.1 pacid=42778558 polypeptide=Potri.002G081800.1.p locus=Potri.002G081800 ID=Potri.002G081800.1.v4.1 annot-version=v4.1 ATGGCAACGGAGGAGGAGAAACAGATGGTGTTTGACGTGGAGGCAGCGAACATGTTAACCAAAGAGCTGAGAGACGTTTTTGCTTCTGGCAAAACAAGAA GTTATGAATGGAGAATATCTCAGTTGAAGAGTATGATAAAGATGTGCGATGAACACGAGGAAGACATTGTTGATGCTCTTCATCAAGATCTCTCAAAGCC TAAACTCGAATCCATCGTTTACGAGATAACTATGCTAAAAAACTCTTGTACATTGGCTATTAAGGAACTGAAACAATGGATGATGCCAGAAAAGGCAAAA ACTTCTTTGTTAACCTTTCCTTCATCAGCCGAAATAGTGCCAGAACCACTGGGTGTTGTGTTGATTATTTCAGCATGGAATTACCCTTTCTTGTTGTCTC TCGATCCACTTGTTGGAGCTATTGCAGCCGGTAATGCGATGGTTTTAAAACCATCAGAATTTTCTCCAGCTACATCCTCGCTACTTGCAAAACTACTTCC AGAGTATTTGGATATCTCTTCGATAAAGGTTGTCGAGGGGGCTGTTTCTGAAACTTCTGCACTACTGGAGCAAAAGTGGGACAAAATATTTTATACAGGC AATGGAATAGTTGGACGCATCGTGATGGCTGCTGCAGCAAAACACCTGACACCAGTTGTCTTGGAGCTTGGAGGAAAATCTCCGGTTGTTGTTGATTCAG CTATCGATTTACAGATTGCAACTAGGCGGTTAATTGCAGGCAAGTGGGGGTGTAATAATGGACAAGCTTGCGTATCTCCGGATTACATCATAACAACGAA AGATTGTGCTGACAAACTGGTGGACTCTCTGAAAAAAGAACTAGAGACATTTTATGGAAAGAACCCATTGGAATCAAAAGACTTATCTCGAATTGTGAAT TCCAAACATTTTTCTCGTTTGACAAAGCTACTGGACGAGGATAAGGTTTCTAGAAAGATTGTCTATGGAGGTGAAAGAGACGAAGCCAACCTGAAAATTT CTCCCACCATACTGGTGGACGTTCCTTGTGACTCTCTGATAATGAAAGAAGAGATTTTCGGTCCCTTGCTTCCCATTCTCATTGTTAGCAAAATCGAGGA CAGCTTTGATATGATAAATTCGGGAACAAAGCCACTTGCAGCGTATTTATTTACCAATAACAAGAAGCTGAAAGAGCAGTTTGTGATGTCTGTTTCTGCA GGGGGTGTGGTCATAAATGACATTGCTATGCATCTTGCAATTCATACCCTTCCATTTGGGGGCGTGGGCGAGAGTGGAACGGGTTCATACCATGGCAAAT TTTCCTTCGATGCTTTTAGCCACAAGAAGGCAGTTCTATATCGAAGTTTTATGGGCGATGCAGCTTTGAGATATCCACCGTACACACGGGGAAAGCTAAG ATTGATGAAGGCTTTCATGACTAGCAATTTTTGGACCATACTCCGCGCTTTGTTTGGACGGTCTTAA
AA sequence Show only first row Show all	>Potri.002G081800.1 pacid=42778558 polypeptide=Potri.002G081800.1.p locus=Potri.002G081800 ID=Potri.002G081800.1.v4.1 annot-version=v4.1 MATEEEKQMVFDVEAANMLTKELRDVFASGKTRSYEWRISQLKSMIKMCDEHEEDIVDALHQDLSKPKLESIVYEITMLKNSCTLAIKELKQWMMPEKAK TSLLTFPSSAEIVPEPLGVVLIISAWNYPFLLSLDPLVGAIAAGNAMVLKPSEFSPATSSLLAKLLPEYLDISSIKVVEGAVSETSALLEQKWDKIFYTG NGIVGRIVMAAAAKHLTPVVLELGGKSPVVVDSAIDLQIATRRLIAGKWGCNNGQACVSPDYIITTKDCADKLVDSLKKELETFYGKNPLESKDLSRIVN SKHFSRLTKLLDEDKVSRKIVYGGERDEANLKISPTILVDVPCDSLIMKEEIFGPLLPILIVSKIEDSFDMINSGTKPLAAYLFTNNKKLKEQFVMSVSA GGVVINDIAMHLAIHTLPFGGVGESGTGSYHGKFSFDAFSHKKAVLYRSFMGDAALRYPPYTRGKLRLMKAFMTSNFWTILRALFGRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Potri.002G081800 [exp]	0	1	Pt-ALDH3.1
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Potri.016G037300 [exp]	1.00	0.7991	Pt-ORG2.3
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Potri.010G165800 [exp]	9.38	0.7052
AT5G16970		AT-AER	alkenal reductase (.1)		Potri.017G004032 [exp]	14.69	0.7272
AT1G23390			Kelch repeat-containing F-box ...		Potri.010G042900 [exp]	20.34	0.6870
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G116170 [exp]	20.34	0.6398
AT5G01750			Protein of unknown function (D...		Potri.016G131850 [exp]	28.84	0.6679
AT3G51000			alpha/beta-Hydrolases superfam...		Potri.011G048000 [exp]	56.16	0.6171
AT4G17080			Histone H3 K4-specific methylt...		Potri.003G085000 [exp]	67.19	0.6378
AT3G14470			NB-ARC domain-containing disea...		Potri.012G123200 [exp]	77.47	0.6293
AT5G60570			Galactose oxidase/kelch repeat...		Potri.013G077800 [exp]	86.29	0.5768

Compare expression of checked genes

Potri.002G081800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.