Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21740 643 / 0 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 565 / 0 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 315 / 7e-94 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT1G20530 202 / 3e-55 Protein of unknown function (DUF630 and DUF632) (.1) AT5G54480 202 / 2e-54 Protein of unknown function (DUF630 and DUF632) (.1) AT4G39790 174 / 2e-45 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 171 / 7e-44 Protein of unknown function (DUF630 and DUF632) (.1) AT1G02110 167 / 5e-43 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 167 / 9e-43 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT4G30130 164 / 5e-42 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G179100 [exp] 1192 / 0 AT1G21740 617 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.004G182900 [exp] 359 / 7e-111 AT4G35240 639 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.005G070200 [exp] 347 / 1e-106 AT1G21740 315 / 3e-94 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G142900 [exp] 342 / 3e-104 AT4G35240 621 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.005G249400 [exp] 279 / 1e-82 AT1G20530 359 / 9e-116 Protein of unknown function (DUF630 and DUF632) (.1) Potri.002G011700 [exp] 254 / 1e-73 AT4G35240 348 / 5e-109 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.004G177200 [exp] 233 / 3e-65 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G108400 [exp] 229 / 5e-64 AT1G21740 231 / 4e-64 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G137500 [exp] 214 / 9e-59 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029683 [exp] 811 / 0 AT1G21740 696 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10042722 [exp] 805 / 0 AT1G21740 659 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10023949 [exp] 348 / 3e-109 AT4G35240 655 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10014445 [exp] 347 / 2e-106 AT4G35240 712 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10025077 [exp] 231 / 2e-64 AT4G35240 237 / 3e-66 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10024007 [exp] 230 / 6e-64 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024039 [exp] 201 / 3e-54 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041710 [exp] 197 / 9e-53 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10015534 [exp] 194 / 2e-52 AT2G19090 480 / 4e-160 Protein of unknown function (DUF630 and DUF632) (.1) Lus10020009 [exp] 171 / 2e-46 AT2G19090 381 / 1e-125 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [poplar] [flax] DUF632 Protein of unknown function (DUF632) PF04783 [poplar] [flax] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Potri.002G082000.1 pacid=42777915 polypeptide=Potri.002G082000.1.p locus=Potri.002G082000 ID=Potri.002G082000.1.v4.1 annot-version=v4.1 ATGGGCTGTGGAGGTTCTAAAGTGGACGATTTACCACTAGTAGTTCTCTGTAGAGAGCGCAAGGAAGTCATCAAAGCTGCCTCCGACCACCGCTACGCTC TCGCTGCTGCACACGTGGCTTATTTTCATTCGCTGAGAGACGTTGGCGACGCGATTCGCCGGTTTGTCGATGAAGGGCTCGTGATCGCCTCTTCCTCAAC CGCTCCTGCCTCTCCTGTACTAACATTACCATCTCGCGAAGGGAAATCCAGGCACATATCGAAGAACTCCTCTACTTCAACCTCACTTTCGCACTCTATA GACACCAAAAGCAAAGACGAGGAGATTGAAGATTCGCATTTGCGCTTGTCTTCCGGGTCGGATTTGGATTCGGACTCAGGTTCAGGTTCAGGTCACATCC ACATTCATGATACCCCTGAAGAAGAAGAAGAAGAAGGAGCTGTAAGAGAGATACCTTCTACTTCTTACAATAATAATTTTAATGATTATCCCCAACCTCA AGGAAATTGGGGTTTTCCTAATTACTCAGGAGATAATCCGTATCCTAACCCGTATCCGTATCCATACTCGTATGAGAATTCGTATGCTAATACGTATTAT ATGAAGAGATCTGCTACTCCGGCTAAAACGGTGGTGTATGAGGATCCGTCAGTAAATGGGTATTCTGATGGCGGGTCGGGTTATTACGGAGGTGGGTATT TTGGGTACCCGATGATGAGTTCACCAGCAAGGAAGCCAAGTCCTGAGAAGCCACCGCCGGTGCCCCCATCACCACCAAGAGTGTCAACATGGGATTATTT CAATGTGTTCGATGCATACGACAATGGTGGTAGTGGTGGGTATCCAGCTTATCATCCGTACGCGAGATACGGATATGGGTCGAGTACAAGTAGTCCAGAT TCGAAAGAGGTGAGGGAGAGAGAAGGGATTCCTGATTTGGAAGATGAAACGGAGCATGAAGTAATAAAAGAGGTTCATAAAGAGAAGAAGAAAGCGAGTG AAGAAATGGATTTGAATGGAAAAATGAAGTTTAATGAGGAAATGATGAGGAATTACGGAGAAGGTACTTCAAAATCAGTGCATATAGAAAGCAGTAGTGA GAGTTTAGAGTCTGTTAAAGGTAAAGGAATCAAGAACAGTATGAGTCCGAACACGGTTCAGAGTCCTGATAGTATTGTTTCGAAGAGCCCTGAAGAGGGG TCTGTTAGGAAAAAGGAGGTTAGTTTTGAGGTTGAAGATGCATCTAATGTAACAGTGGAAATTGAGTCTTCAAAGCCTAGTAGTGTTCCTACTACTAAAT TGTCGGCTCATGGTACAAGGGATCTTCAAGAGGTGGTGAAGGAAATAAGGGACGAGTTTGAGACCGCTTCTGGTTATGGGAATGAGGTTGCATTAATGCT TGAGGTGAGCAAGTTGCCTTACCAATGCCAGCAAAGAAGCTCCCTATTTAAAGTGATTCTTTCCAGGATCCTGTATTTGGTGTCTTCCCACCCTCCTGCA AGGCCATCGGTACGCATTTCTTCTAGGACAATGAAAATGGCAAAGTCTTACCCCTTGGAATCTGGAAATGACTTTGACATGAGGCGGAGAAACCTATCAT CTACTCTACAGGAAATTTACGCTTGGGAGAAGAAACTATACAAGGAAGTGAGGGATGAAGAACGGCTACGGGTCATCTATGAAAAGGAGTGCAAAAGGTT AAAAATGTTGGATGACCGTGGAGCAGAGTCTAGTAAAATTGATGCTACTCAGGCTTCGATAAGGAAATTGCTGACAAAAATCAATGTGTGTATCCGAGCT GTTGATGCCATATCCAGTAAGATACACAGGTTGAGGGATGAAGAATTGCAGCCTCAGATCACTGAATTGATTCATGGGTTGATCAGAATGTGGAAGTCCA TGCTCAGATGTCACCAGAAGCAGTTCCAAGCTATTATGGATAGCAAAGTTCGCTCTCTAAAAGCACAGAGAGATTCTGGTTTGAAAGCCACAGTTGAACT TGAAGTAGAGCTTATTAATTGGTGCACCTGTTTTAACAATTGGATTAACACCCAAAAATCCTATGTGGAGTCGTTAAATGGGTGGCTGTTAAGGTGCCTT CACCAGGAACCTGAAGTAACCGCTGATGGGATTGTGCCCTTCTCCCCAAGCAGAATTGGTGCTCCACCTATTTTTGTAATTTGCAATGATTGGTACCAAG GAATTGTTAGGATTTCTGAGCAGGAGGGGGTTGAAAATGCCATGCTTGGTTTTACTTCAAGCTTGCATCAGTTGTGGGAACGGCAAGATGAGGAGCAGCG ACAGAGGATCAAAGCAGAGTACCTTACAGGGGATTTTGAGAAACAGCTTAAAACCTTGCGAATGGAGAAGGGAAGGATTGAGCAGGAGCGTGGAATCTCA CCTCTAGATAAAACCATGTCAAAGGTTTCTTCAGAGAGTGGAATCTCACCACTAGATGATCTGAAGGTGGATTTGGATTCAATGAGGAAGAAATTGGAAG AAGAGAGGGCAAGGCACAAGGAAACAGCCAAATCAGTCCATGATGCAGCTTCCAGTAGTTTACAAGCAGGTTTGGTCCCAATTTTTCAGGCTCTGGGCAA ATTCACTTCCGAAGTTCTGAAAGCTCATGAAGAAGTTAGGCTTTGA
AA sequence Show only first row Show all	>Potri.002G082000.1 pacid=42777915 polypeptide=Potri.002G082000.1.p locus=Potri.002G082000 ID=Potri.002G082000.1.v4.1 annot-version=v4.1 MGCGGSKVDDLPLVVLCRERKEVIKAASDHRYALAAAHVAYFHSLRDVGDAIRRFVDEGLVIASSSTAPASPVLTLPSREGKSRHISKNSSTSTSLSHSI DTKSKDEEIEDSHLRLSSGSDLDSDSGSGSGHIHIHDTPEEEEEEGAVREIPSTSYNNNFNDYPQPQGNWGFPNYSGDNPYPNPYPYPYSYENSYANTYY MKRSATPAKTVVYEDPSVNGYSDGGSGYYGGGYFGYPMMSSPARKPSPEKPPPVPPSPPRVSTWDYFNVFDAYDNGGSGGYPAYHPYARYGYGSSTSSPD SKEVREREGIPDLEDETEHEVIKEVHKEKKKASEEMDLNGKMKFNEEMMRNYGEGTSKSVHIESSSESLESVKGKGIKNSMSPNTVQSPDSIVSKSPEEG SVRKKEVSFEVEDASNVTVEIESSKPSSVPTTKLSAHGTRDLQEVVKEIRDEFETASGYGNEVALMLEVSKLPYQCQQRSSLFKVILSRILYLVSSHPPA RPSVRISSRTMKMAKSYPLESGNDFDMRRRNLSSTLQEIYAWEKKLYKEVRDEERLRVIYEKECKRLKMLDDRGAESSKIDATQASIRKLLTKINVCIRA VDAISSKIHRLRDEELQPQITELIHGLIRMWKSMLRCHQKQFQAIMDSKVRSLKAQRDSGLKATVELEVELINWCTCFNNWINTQKSYVESLNGWLLRCL HQEPEVTADGIVPFSPSRIGAPPIFVICNDWYQGIVRISEQEGVENAMLGFTSSLHQLWERQDEEQRQRIKAEYLTGDFEKQLKTLRMEKGRIEQERGIS PLDKTMSKVSSESGISPLDDLKVDLDSMRKKLEEERARHKETAKSVHDAASSSLQAGLVPIFQALGKFTSEVLKAHEEVRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21740			Protein of unknown function (D...		Potri.002G082000 [exp]	0	1
AT4G11450			Protein of unknown function (D...		Potri.003G127500 [exp]	3.46	0.8577
					Potri.004G093250 [exp]	4.24	0.8774
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Potri.006G207700 [exp]	7.74	0.8547
AT1G68410			Protein phosphatase 2C family ...		Potri.010G121600 [exp]	8.66	0.8140
AT3G26790	B3	FUS3	FUSCA 3, AP2/B3-like transcrip...		Potri.001G322700 [exp]	11.40	0.8124
AT1G79380			Ca(2)-dependent phospholipid-b...		Potri.008G081300 [exp]	11.95	0.8327
AT5G43420			RING/U-box superfamily protein...		Potri.002G039700 [exp]	16.43	0.8100
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.001G298900 [exp]	17.02	0.8396
AT5G50780			Histidine kinase-, DNA gyrase ...		Potri.012G102800 [exp]	17.97	0.8217
AT2G34060			Peroxidase superfamily protein...		Potri.004G052100 [exp]	22.97	0.7974

Compare expression of checked genes

Potri.002G082000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.