Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57040 180 / 2e-56 ATRR4, ARR9 RESPONSE REGULATOR 4, response regulator 9 (.1) AT2G41310 174 / 4e-54 ARR8, ATRR3 RESPONSE REGULATOR 8, response regulator 3 (.1) AT3G56380 162 / 2e-50 ARR17 response regulator 17 (.1) AT2G40670 157 / 1e-48 ARR16 response regulator 16 (.1.2) AT3G48100 156 / 1e-47 ATRR2, IBC6, ARR5 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) AT5G62920 156 / 1e-47 ARR6 response regulator 6 (.1) AT1G10470 154 / 5e-46 IBC7, ATRR1, ARR4, MEE7 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) AT1G59940 152 / 1e-45 ARR3 response regulator 3 (.1) AT1G74890 150 / 3e-45 ARR15 response regulator 15 (.1) AT1G19050 150 / 3e-45 ARR7 response regulator 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G197466 [exp] 189 / 2e-60 AT2G41310 232 / 5e-78 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.T124806 [exp] 188 / 4e-60 AT2G41310 232 / 6e-78 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.001G027000 [exp] 184 / 1e-58 AT2G41310 203 / 2e-66 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.006G041100 [exp] 182 / 3e-57 AT3G57040 273 / 4e-93 RESPONSE REGULATOR 4, response regulator 9 (.1) Potri.016G038000 [exp] 178 / 7e-56 AT2G41310 242 / 2e-81 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.019G058900 [exp] 153 / 4e-47 AT3G56380 223 / 5e-76 response regulator 17 (.1) Potri.015G070000 [exp] 154 / 2e-46 AT3G48100 231 / 1e-77 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) Potri.019G133600 [exp] 151 / 2e-46 AT3G56380 183 / 2e-60 response regulator 17 (.1) Potri.010G037800 [exp] 154 / 5e-46 AT1G59940 202 / 5e-65 response regulator 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039524 [exp] 181 / 8e-57 AT3G57040 222 / 2e-73 RESPONSE REGULATOR 4, response regulator 9 (.1) Lus10016334 [exp] 173 / 1e-53 AT3G57040 211 / 5e-69 RESPONSE REGULATOR 4, response regulator 9 (.1) Lus10002750 [exp] 173 / 1e-53 AT3G57040 212 / 4e-69 RESPONSE REGULATOR 4, response regulator 9 (.1) Lus10042153 [exp] 156 / 2e-47 AT3G48100 213 / 1e-70 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) Lus10004243 [exp] 155 / 3e-47 AT3G48100 220 / 2e-73 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) Lus10029211 [exp] 147 / 2e-43 AT1G10470 211 / 4e-68 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) Lus10030822 [exp] 147 / 3e-43 AT1G59940 201 / 2e-64 response regulator 3 (.1) Lus10030664 [exp] 145 / 4e-42 AT1G10470 206 / 2e-65 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) Lus10030359 [exp] 132 / 5e-38 AT2G41310 142 / 3e-42 RESPONSE REGULATOR 8, response regulator 3 (.1) Lus10007885 [exp] 132 / 6e-38 AT2G41310 143 / 1e-42 RESPONSE REGULATOR 8, response regulator 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [poplar] [flax] CheY PF00072 [poplar] [flax] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Potri.002G082200.1 pacid=42777410 polypeptide=Potri.002G082200.1.p locus=Potri.002G082200 ID=Potri.002G082200.1.v4.1 annot-version=v4.1 ATGGAGATCATGGAATCAGGTGTTGTTGATACACAACATCAGGAAGAAGAGAAACATCAGCAACAAAAGGAAGAAGAAGGAGAAGAGAAACATAAGCAAC AAAGGGATCAGGAGGGGGAAGAAGAAGAGAAACATTTTCATGTCCTGGCAGTGGATGATAGTTTTATTGACAGGAAGCTTTTAGAAAGGCTGCTTAAAGT ATCTTCATACCAAGTGACATTTGTGGACTCTGGGGATAAGGCTTTGGAATATTTAGGTCTCCTTGATAGCATAGACAATGTCAATGCAACCTCTTCTTCT TCGTCGTCCCAATCACCACAACAAGAGGGGATGAAAGTAAATTTGATCATGACTGATTACTGCATGCCTGGAATGAGCGGTTATGATTTACTCAAACGAG TCAAGGGATCTTATTGGAAAGATGTTCCAGTGGTGGTTATGTCCTCAGAGAATATACCTTCCAGAATTAGAATGTGCTTGGAAGAAGGAGCAGAGGAGTT CTTATTGAAGCCACTTCAATTATCAGATGTTGAAAAACTTCAGACTCACCTTCTAAAGTCGCTTGACAAGTACTCTTCCAAAAGGATTGATGACAACAGT TTTAATACTGACAGCAGCAACATTACTGTTAGCAACAAGAGCAACAGCAACAATATTGTTAGCAAGAGGAAGGCATTGTCTCCAGAGATTGAGGACAGAA GACCTAAAATGAAAGGATTGGCTGTTGTATAG
AA sequence Show only first row Show all	>Potri.002G082200.1 pacid=42777410 polypeptide=Potri.002G082200.1.p locus=Potri.002G082200 ID=Potri.002G082200.1.v4.1 annot-version=v4.1 MEIMESGVVDTQHQEEEKHQQQKEEEGEEKHKQQRDQEGEEEEKHFHVLAVDDSFIDRKLLERLLKVSSYQVTFVDSGDKALEYLGLLDSIDNVNATSSS SSSQSPQQEGMKVNLIMTDYCMPGMSGYDLLKRVKGSYWKDVPVVVMSSENIPSRIRMCLEEGAEEFLLKPLQLSDVEKLQTHLLKSLDKYSSKRIDDNS FNTDSSNITVSNKSNSNNIVSKRKALSPEIEDRRPKMKGLAVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Potri.002G082200 [exp]	0	1
AT1G72160			Sec14p-like phosphatidylinosit...		Potri.004G138200 [exp]	5.83	0.8798
AT3G54950		pPLAIIIbeta, PL...	patatin-related phospholipase ...		Potri.015G122700 [exp]	8.48	0.8804
AT3G19940			Major facilitator superfamily ...		Potri.005G090700 [exp]	9.16	0.8382
AT1G71380		ATCEL3 ,ATGH9B3	ARABIDOPSIS THALIANA GLYCOSYL ...		Potri.019G069300 [exp]	9.16	0.8620
AT4G01680	MYB	ATMYB55	myb domain protein 55 (.1.2.3)		Potri.014G111200 [exp]	14.69	0.8477
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Potri.003G125400 [exp]	15.39	0.8779
AT5G06940			Leucine-rich repeat receptor-l...		Potri.006G056600 [exp]	18.86	0.8755
AT3G16490		IQD26	IQ-domain 26 (.1)		Potri.003G047800 [exp]	19.41	0.8527
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Potri.001G301800 [exp]	21.16	0.8519
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Potri.010G109200 [exp]	23.36	0.8395	Pt-CEL1.2

Compare expression of checked genes

Potri.002G082200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.