Plant FIBer expression Database

Pt-ALAD.1 (Potri.002G082300) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-ALAD.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G69740 648 / 0 HEMB1 Aldolase superfamily protein (.1.2)
AT1G44318 481 / 3e-169 HEMB2 Aldolase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029675
[exp]
638 / 0 AT1G69740 663 / 0.0 Aldolase superfamily protein (.1.2)
Lus10042716
[exp]
598 / 0 AT1G69740 644 / 0.0 Aldolase superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0036 TIM_barrel PF00490 ALAD Delta-aminolevulinic acid dehydratase
Representative CDS sequence
>Potri.002G082300.3 pacid=42777862 polypeptide=Potri.002G082300.3.p locus=Potri.002G082300 ID=Potri.002G082300.3.v4.1 annot-version=v4.1
ATGGCTTCGTCAATCTTCAATGCTCCCTGTACGGTTCCTGCAGTGAAAGGCAAAAACTATTTTGGTCTGAAACCTGCTGTCAATAATGACTTGAGGTTCA
ATGTTGGCAAGAAAACCTCAATTATAGGATGTCCAAAGCGTGTTTTTACTGTGAGAGCCAGTGAAAAGAAGGATGGTCCAATAAAGAAGTTGGGGTTAAG
TGACGCGGAATGTGAAGCTGCTGTTGTGGCAGGGAATGTGCCCGAGGCCCCTCCTGTGCCGCCTAGGCCTGCCGCACCCGCTGGGACTCCTGTCGTCCCT
TCTCTTCCACTTAGTCGTCGTCCACGTCGTAATCGCAAGTCACCTGTCATGAGAGCATCATTCCAAGAAACTAGCATATCGCCTGCCAATTTTGTCTATC
CTCTTTTTATTCATGAAGGTGAGGAAGACACACCTATTGGAGCAATGCCTGGATGTTATAGGCTTGGATGGAGACATGGACTCGTGGAAGAGGTAGCTAA
GGCTCGAGATGTTGGTGTAAATAGTATTGTTCTCTTTCCGAAAGTTCCAGATGCTTTGAAGTCTTCCACAGGAGATGAAGCATACAATGATAATGGTCTA
GTTCCTAGAGCAATACAGCTGCTCAAGGACAAATATCCTGACCTTGTTATCTACACTGATGTTGCTCTGGATCCATATTCCTCTGATGGGCATGATGGCA
TCGTTAGAGAAGATGGAGTCATAATGAATGATGAGACAGTGTATCAATTATGTAAACAAGCTGTTTCTCAGGCCCGGGCTGGAGCAGATGTTGTTAGTCC
AAGTGACATGATGGACGGCCGTGTAGGAGCAATAAGGAAAGCTCTTGATGCAGAAGGATTTCAGCATGTTTCAATCATGTCCTATACAGCAAAATATGCC
AGTTCATTTTATGGACCATTTCGAGAGGCACTGGAGTCAAAGCCACGCTTTGGAGACAAAAAGACTTATCAGATGAACCCAGCAAATTACAGAGAGGCTC
TGGTTGAGGCCCATGAAGACGAGTCTGAAGGAGCTGATATCCTTCTGGTGAAACCTGGTCTACCTTATTTGGATATTATAAGGCTTCTCAGAGATAAATC
TCCTCTGCCAATTGCTGCTTATCAGGTTTCTGGTGAATACTCAATGATTAAGGCTGGTGGGGTTCTCAAAATGATTGATGAAGAAAGAGTTATGATGGAG
TCCTTGATGTGTCTTCGACGGGCTGGGGCTGACATTATCCTAACGTATTTCGCTCTACAAGCTGCAAGATGTTTGTGTGGTGAGAAGAGGTGA
AA sequence
>Potri.002G082300.3 pacid=42777862 polypeptide=Potri.002G082300.3.p locus=Potri.002G082300 ID=Potri.002G082300.3.v4.1 annot-version=v4.1
MASSIFNAPCTVPAVKGKNYFGLKPAVNNDLRFNVGKKTSIIGCPKRVFTVRASEKKDGPIKKLGLSDAECEAAVVAGNVPEAPPVPPRPAAPAGTPVVP
SLPLSRRPRRNRKSPVMRASFQETSISPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVEEVAKARDVGVNSIVLFPKVPDALKSSTGDEAYNDNGL
VPRAIQLLKDKYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVYQLCKQAVSQARAGADVVSPSDMMDGRVGAIRKALDAEGFQHVSIMSYTAKYA
SSFYGPFREALESKPRFGDKKTYQMNPANYREALVEAHEDESEGADILLVKPGLPYLDIIRLLRDKSPLPIAAYQVSGEYSMIKAGGVLKMIDEERVMME
SLMCLRRAGADIILTYFALQAARCLCGEKR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G69740 HEMB1 Aldolase superfamily protein (... Potri.002G082300
[exp]
0 1 Pt-ALAD.1
AT1G10310 NAD(P)-binding Rossmann-fold s... Potri.004G228533
[exp]
2.82 0.8820
AT1G05385 Psb27-H1, LPA19 LOW PSII ACCUMULATION 19, phot... Potri.008G152800
[exp]
3.60 0.8748
AT2G26500 cytochrome b6f complex subunit... Potri.014G037000
[exp]
5.09 0.9184
AT1G43245 SET domain-containing protein ... Potri.005G193701
[exp]
9.48 0.8106
AT5G39790 5'-AMP-activated protein kinas... Potri.017G125400
[exp]
10.24 0.8457
AT3G01910 AT-SO, ATSO, SO... sulfite oxidase (.1.2.3) Potri.001G330900
[exp]
11.57 0.8236 SOX.1
AT1G08380 PSAO photosystem I subunit O (.1) Potri.009G160800
[exp]
14.89 0.8971
AT1G15820 CP24, LHCB6 light harvesting complex photo... Potri.001G210000
[exp]
18.89 0.8945 Pt-LHCB6.2,1
AT1G74070 Cyclophilin-like peptidyl-prol... Potri.012G058700
[exp]
21.81 0.8910
AT4G01050 TROL thylakoid rhodanese-like (.1) Potri.002G169100
[exp]
25.69 0.8906

Potri.002G082300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.