Plant FIBer expression Database

Potri.002G082500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G21760 474 / 7e-170 ATFBP7 F-box protein 7 (.1)
AT4G33210 43 / 0.0002 SLOMO SLOW MOTION, F-box family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G178600
[exp]
603 / 0 AT1G21760 479 / 6e-172 F-box protein 7 (.1)
Potri.006G220900
[exp]
47 / 1e-05 AT4G33210 1183 / 0.0 SLOW MOTION, F-box family protein (.1)
Potri.004G119500
[exp]
45 / 3e-05 AT5G39250 347 / 8e-122 F-box family protein (.1)
Potri.014G022100
[exp]
43 / 7e-05 AT4G24210 182 / 1e-59 SLEEPY1, F-box family protein (.1)
Potri.002G122300
[exp]
43 / 0.0001 AT4G24210 185 / 2e-60 SLEEPY1, F-box family protein (.1)
Potri.018G048700
[exp]
44 / 0.0002 AT4G33210 1204 / 0.0 SLOW MOTION, F-box family protein (.1)
Potri.017G092800
[exp]
42 / 0.0002 AT5G39250 334 / 7e-117 F-box family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042716
[exp]
529 / 0 AT1G69740 644 / 0.0 Aldolase superfamily protein (.1.2)
Lus10029676
[exp]
484 / 3e-172 AT1G21760 444 / 5e-156 F-box protein 7 (.1)
Lus10026472
[exp]
45 / 5e-05 AT4G33210 1225 / 0.0 SLOW MOTION, F-box family protein (.1)
Lus10038067
[exp]
45 / 6e-05 AT4G33210 1215 / 0.0 SLOW MOTION, F-box family protein (.1)
Lus10042637
[exp]
43 / 9e-05 AT4G24210 186 / 6e-61 SLEEPY1, F-box family protein (.1)
Lus10032969
[exp]
42 / 0.0005 AT5G39250 351 / 1e-123 F-box family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0271 F-box PF12937 F-box-like F-box-like
Representative CDS sequence
>Potri.002G082500.1 pacid=42778721 polypeptide=Potri.002G082500.1.p locus=Potri.002G082500 ID=Potri.002G082500.1.v4.1 annot-version=v4.1
ATGACTTCAGATTTTGCATTACAAATTCCTGCTGAGCTCGAGACAGCTCTGCAGTTGAAGACTGTGCAGTACTTGGTTACAAAGAGACCGTGGCTCGATC
TCTATGGGGTTAATGTTCGACCTGTTGCACCATACGGAAGTGCTAGCAGAAGGGTAAATGTTGATCCAGCGTTGATACACAGATGCTTGCCTGATGAGCT
GCTCTTTGAGGTATTTTCACGAATGGCTCCATATGATTTGGGAAGGGCAGCTTGTGTTTGTCGAAAATGGAGATACACTCTTCGTAACCCCATATTCTGG
CGCAATGCTTGCCTAAAGGCTTGGCAGCTGTCTGGAATGGTTGAGAACTATAAAATTTTGCAATCAAAGTATGAGAGCTCGTGGAGGAAAATGTGGCTTT
TGAGGCCAAGGATCCGTATTGATGGTCTCTATGTCAGTAGGAATACCTATATTCGCGCAGGTGTGCGAGAGTGGACCGTCACCAATCCAGTTCACTTGGT
TTGCTATTACCGTTACATGAGAATTTTTCCTTCTGGCAGGTTCCTTTACAAGACTTCTGGTCAAACAGTAAAGGAAGTTGTGAAATGCATGAGTTTTCGT
GCTTCTAAAACAGATGGTGTTTTCAGTGGCCGCTACACATTGACAGATGACAAGGTTGAAGCCACTTTCATGTACCCTGGCTTGTGTCCCACCATGTGGA
GAGCCTGCTTGAGGTTGAGGGGGACAACTTTAGGGGCCAACAATAGGATGGATTTACTCTCACTTTCTACAAGTAAAGTGAACAGTGATGGGATAATTGA
GCCGGGGGAGGACATTCTTGGACCAGTTGAGTTGCAAGAGAGTGTGATTTCACGGATATCACACCAGAGGGGTCTAGCTCCTTTCGCATTTGTTCCATTT
GAAGAGGTGGAAACATCAGTTTTGAACCTGCCCGTGGAAAAGATGGATTATTATTTACCTGGCTAG
AA sequence
>Potri.002G082500.1 pacid=42778721 polypeptide=Potri.002G082500.1.p locus=Potri.002G082500 ID=Potri.002G082500.1.v4.1 annot-version=v4.1
MTSDFALQIPAELETALQLKTVQYLVTKRPWLDLYGVNVRPVAPYGSASRRVNVDPALIHRCLPDELLFEVFSRMAPYDLGRAACVCRKWRYTLRNPIFW
RNACLKAWQLSGMVENYKILQSKYESSWRKMWLLRPRIRIDGLYVSRNTYIRAGVREWTVTNPVHLVCYYRYMRIFPSGRFLYKTSGQTVKEVVKCMSFR
ASKTDGVFSGRYTLTDDKVEATFMYPGLCPTMWRACLRLRGTTLGANNRMDLLSLSTSKVNSDGIIEPGEDILGPVELQESVISRISHQRGLAPFAFVPF
EEVETSVLNLPVEKMDYYLPG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G21760 ATFBP7 F-box protein 7 (.1) Potri.002G082500
[exp]
0 1
AT5G39360 EDL2 EID1-like 2 (.1) Potri.004G125000
[exp]
1.41 0.8544
AT3G17980 AtC2 Arabidopsis thaliana C2 domain... Potri.004G089500
[exp]
2.82 0.8415
Potri.015G107925
[exp]
3.87 0.7914
AT1G63690 ATSPPL2 SIGNAL PEPTIDE PEPTIDASE-LIKE ... Potri.003G128500
[exp]
4.24 0.8123
AT3G49800 BSD domain-containing protein ... Potri.007G006400
[exp]
4.47 0.7982
AT5G19680 Leucine-rich repeat (LRR) fami... Potri.006G163900
[exp]
14.45 0.7398
AT3G09640 APX1B, APX2 ASCORBATE PEROXIDASE 1B, ascor... Potri.006G132200
[exp]
16.97 0.7468 APX1.2
AT1G15780 unknown protein Potri.003G025200
[exp]
21.07 0.7386
AT1G23260 MMZ1 ,UEV1A UBIQUITIN E2 VARIANT 1A, MMS Z... Potri.010G107700
[exp]
21.74 0.6815
AT4G38250 Transmembrane amino acid trans... Potri.009G167900
[exp]
24.95 0.7605 PtrANT3

Potri.002G082500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.