Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21780 535 / 0 BTB/POZ domain-containing protein (.1.2) AT1G55760 352 / 3e-121 BTB/POZ domain-containing protein (.1) AT2G39760 70 / 3e-13 ATBPM3 BTB/POZ/MATH-domains containing protein (.1.2) AT3G56230 66 / 5e-12 BTB/POZ domain-containing protein (.1) AT3G06190 66 / 8e-12 ATBPM2 BTB-POZ and MATH domain 2 (.1.2) AT1G01640 60 / 2e-10 BTB/POZ domain-containing protein (.1.2) AT5G19330 59 / 2e-09 ARIA ARM repeat protein interacting with ABF2 (.1.2) AT4G04090 57 / 2e-09 BTB/POZ domain-containing protein (.1) AT2G30600 59 / 4e-09 BTB/POZ domain-containing protein (.1.2.3.4.5) AT5G13060 59 / 4e-09 ABAP1 ARMADILLO BTB protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G178400 [exp] 615 / 0 AT1G21780 543 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.001G468700 [exp] 361 / 2e-124 AT1G55760 522 / 0.0 BTB/POZ domain-containing protein (.1) Potri.013G083800 [exp] 63 / 4e-11 AT3G56230 305 / 2e-104 BTB/POZ domain-containing protein (.1) Potri.010G029500 [exp] 61 / 4e-10 AT3G06190 580 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.008G150100 [exp] 60 / 9e-10 AT5G19330 1045 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.002G077000 [exp] 58 / 2e-09 AT4G08455 369 / 2e-130 BTB/POZ domain-containing protein (.1) Potri.005G183600 [exp] 58 / 2e-09 AT4G08455 342 / 2e-119 BTB/POZ domain-containing protein (.1) Potri.008G200700 [exp] 57 / 5e-09 AT3G06190 582 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.002G052700 [exp] 57 / 1e-08 AT5G19330 994 / 0.0 ARM repeat protein interacting with ABF2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042717 [exp] 581 / 0 AT1G21780 557 / 0.0 BTB/POZ domain-containing protein (.1.2) Lus10029677 [exp] 561 / 0 AT1G21780 538 / 0.0 BTB/POZ domain-containing protein (.1.2) Lus10008348 [exp] 365 / 3e-126 AT1G55760 516 / 0.0 BTB/POZ domain-containing protein (.1) Lus10027101 [exp] 283 / 9e-94 AT1G55760 389 / 3e-136 BTB/POZ domain-containing protein (.1) Lus10010527 [exp] 65 / 4e-11 AT5G19330 1103 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10034070 [exp] 63 / 1e-10 AT5G19330 1092 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10042583 [exp] 63 / 2e-10 AT5G19330 822 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10022039 [exp] 62 / 2e-10 AT5G13060 821 / 0.0 ARMADILLO BTB protein 1 (.1) Lus10029732 [exp] 59 / 9e-10 AT4G08455 354 / 2e-124 BTB/POZ domain-containing protein (.1) Lus10042763 [exp] 59 / 1e-09 AT4G08455 354 / 1e-124 BTB/POZ domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Potri.002G082800.1 pacid=42777177 polypeptide=Potri.002G082800.1.p locus=Potri.002G082800 ID=Potri.002G082800.1.v4.1 annot-version=v4.1 ATGTCTCGCTTTCAAATCAGAATTTCCCCTTCCTTCCACCTCTCCACAGACAACGGAAGAACGATAAAGAGTGAAATGGCAGATTCAAAGGTAGATACCA TCTCCCGACTAGCCCAGTGGAGGATCGAGAACTTTGGCTCTTTCTCTTACAAAAAATCCGATCCTTTCAAGGTCGGAATCTGGAACTGGCACTTGTCTAT AGAGAAGAATCGGTACTTGTACATTCGTTTATTTCCAGAGCCGTCTCGAGCTTCCAAAGAACAGCCTCCTATCGCTAGATTTGTTCTTCGTGTCTCAAAT GCTGGTGCTAATAATCGCAGGCCTTATATCTCTCCAGTTCATGAGAGATCGCTCCGGACAAGTGAGGACTTTGTCTGGCCTGTTGATTCTTCGTTTCATG GTCGCCTCATCATTGATGTTGAGTTTCTAGACCTCAAAATCTGCCCTCTGAATGGTGGGGAAGCGAGTTCTATATGGCCAGGTGATGGAATGATGCCGTC TGTTTCAACTCAAGGCACACTTCGCTGTCTCTCTCGCATGCTGGATGAGGCCATCCATGCTGACGTTACCATTCATACTGCTGATGGCACCCTGAGTGCA CACAAGGCAATTCTTTCTGCAAGTTCACCTGTTTTCGAGAGCATGTTCGACCACGGCCTCAAGGAAAAGGAGTCCTCCACAATCGACATAGAAGATATGA CACTGGAATCTTGCATGACTCTCTTGAGTTACTTGTATGGAACCATCAAGCAAGAGGATTTTTGGAAGCACCGTGTGTCACTGCTGGGGGCGGCGAACAA ATATGACATTGCAGCCCTCAAGGATGCTTGCGAGGAAAGCCTCCTGGAAGACATCAATACCATGAATGTCCTTGAGAGGATGCAAGAGGCTTGGCTTTAC CAGTTGAACAAGCTGAAGAAAGGATGCTTGGCTTACTTGTTTGACTTTGGAAAAATATATGATGTTAGAGATGAAATCGGTAAGTTTTTCAGGCATGCCG ACAAGGAATTGATGGTAGAAATGTTTGAAGAGGTGCTTACGGTTTGGAAACCTGTATAA
AA sequence Show only first row Show all	>Potri.002G082800.1 pacid=42777177 polypeptide=Potri.002G082800.1.p locus=Potri.002G082800 ID=Potri.002G082800.1.v4.1 annot-version=v4.1 MSRFQIRISPSFHLSTDNGRTIKSEMADSKVDTISRLAQWRIENFGSFSYKKSDPFKVGIWNWHLSIEKNRYLYIRLFPEPSRASKEQPPIARFVLRVSN AGANNRRPYISPVHERSLRTSEDFVWPVDSSFHGRLIIDVEFLDLKICPLNGGEASSIWPGDGMMPSVSTQGTLRCLSRMLDEAIHADVTIHTADGTLSA HKAILSASSPVFESMFDHGLKEKESSTIDIEDMTLESCMTLLSYLYGTIKQEDFWKHRVSLLGAANKYDIAALKDACEESLLEDINTMNVLERMQEAWLY QLNKLKKGCLAYLFDFGKIYDVRDEIGKFFRHADKELMVEMFEEVLTVWKPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21780			BTB/POZ domain-containing prot...		Potri.002G082800 [exp]	0	1
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Potri.013G035500 [exp]	4.47	0.7119
AT3G09735			S1FA-like DNA-binding protein ...		Potri.016G087400 [exp]	6.70	0.6968	Pt-S1FA3.2
AT4G14455		ATBS14B ,ATBET1...	ARABIDOPSIS THALIANA BET1P/SFT...		Potri.010G074100 [exp]	9.38	0.7132
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Potri.002G220500 [exp]	11.18	0.7614
AT1G25682			Family of unknown function (DU...		Potri.010G130300 [exp]	13.85	0.6575
AT1G52740		HTA9	histone H2A protein 9 (.1)		Potri.006G249300 [exp]	20.04	0.7086	HTA907
AT2G16710			Iron-sulphur cluster biosynthe...		Potri.010G238800 [exp]	20.19	0.6683
AT1G29040			unknown protein		Potri.011G064600 [exp]	30.39	0.6924
AT4G09670			Oxidoreductase family protein ...		Potri.005G200200 [exp]	32.18	0.7043
AT2G26970			Polynucleotidyl transferase, r...		Potri.001G222300 [exp]	40.54	0.6921

Compare expression of checked genes

Potri.002G082800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.