Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32640 54 / 5e-08 Sec23/Sec24 protein transport family protein (.1.2) AT3G44340 47 / 1e-05 CEF clone eighty-four (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G035800 [exp] 70 / 5e-13 AT4G32640 1219 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.005G049100 [exp] 67 / 4e-12 AT4G32640 1238 / 0.0 Sec23/Sec24 protein transport family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000939 [exp] 66 / 1e-11 AT4G32640 1241 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Lus10004122 [exp] 61 / 4e-10 AT4G32640 1209 / 0.0 Sec23/Sec24 protein transport family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G082900.2 pacid=42777480 polypeptide=Potri.002G082900.2.p locus=Potri.002G082900 ID=Potri.002G082900.2.v4.1 annot-version=v4.1 ATGCCCAATTCTGGTTCTCGGCCTTCCCCTGGTTTCCCAATGGCGTCGCTGCCTGGGACCACTCTTTGGTCAACTGGAAAGCCGCCCTCAGGATCCCAAC CATCCTTATTACCGCCCAATGTAGCAGCAGGACGACCCACTGGCCCTCCTGTTAGTCAGCCCCCACCTCCTTTAGCGTCCAGACCCTCGCCTCCGGGGTC AATGCCCTCTTCTATGCGTGGTCCCGCAGTGCCTCCTTCTGGTGGCTTCCCTTCTCCTGGTTCACCTAGTGGTCCTACTGTTCCGCCACCGCCAGGGGTT CGCCCGAGTCCTTTTGCTTCGTCTTCTCCGTTGAGTTCTGGTCCAGTTGTTAACACATCGAGCGTGCCACCTAATGAAGCAGTGAGTAATGGGATGTCGT TTGCTTCTGGTTCTATGCTTGGTGGGCCTAGATTTCCTCCAGTTAGCAGTACCCGACCACCACCTATGGGATCTCCACCAATTGTTTCAGCTCCAGCTCC CCCTCAAGCTCCACCTGTTTCTTCTATGCAATCACGGCCGCCATTTTCTGTTGGAGGTCCAGGTGTGCCGCCCCCTTTTTTAGCGGGATCTCAAGGTGTA CCGCCACCCCCAGGTCCTCCCTTTGGAGCACAGACATGGTCACTGCAACCTCAGCAGCCACCTACAAAGTTTGGAACGCCTCCACATTTAGCAAACCAAG GTATGATGTCTATATCGCCTGCTATGGGCCAAAATGGAGCCTCTCTGGCAGGGCAACCAAAGATGGATAGCAAGAGTGTTCCAAGGCCCACTCTAACCTC TGAATCAATCCATCATGAAACACGTCTGAACAATCAGGCTAACCCTCCTCCCGCATGTCATTTGAACTTCTTATGGAAGGGGCATATTGCTTGA
AA sequence Show only first row Show all	>Potri.002G082900.2 pacid=42777480 polypeptide=Potri.002G082900.2.p locus=Potri.002G082900 ID=Potri.002G082900.2.v4.1 annot-version=v4.1 MPNSGSRPSPGFPMASLPGTTLWSTGKPPSGSQPSLLPPNVAAGRPTGPPVSQPPPPLASRPSPPGSMPSSMRGPAVPPSGGFPSPGSPSGPTVPPPPGV RPSPFASSSPLSSGPVVNTSSVPPNEAVSNGMSFASGSMLGGPRFPPVSSTRPPPMGSPPIVSAPAPPQAPPVSSMQSRPPFSVGGPGVPPPFLAGSQGV PPPPGPPFGAQTWSLQPQQPPTKFGTPPHLANQGMMSISPAMGQNGASLAGQPKMDSKSVPRPTLTSESIHHETRLNNQANPPPACHLNFLWKGHIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32640			Sec23/Sec24 protein transport ...		Potri.002G082900 [exp]	0	1
AT5G51160			Ankyrin repeat family protein ...		Potri.015G111300 [exp]	1.00	0.9096
					Potri.004G015401 [exp]	3.00	0.8170
					Potri.010G080501 [exp]	8.24	0.7916
AT4G34440		AtPERK5	proline-rich extensin-like rec...		Potri.004G153600 [exp]	8.83	0.7622
AT1G21980		ATPIPK1, ATPIP5...	phosphatidylinositol-4-phospha...		Potri.019G015768 [exp]	9.16	0.8203
AT4G03520		ATHM2	Thioredoxin superfamily protei...		Potri.013G132200 [exp]	22.24	0.7691
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Potri.006G201900 [exp]	23.62	0.8028
					Potri.005G096266 [exp]	26.07	0.7993
AT1G78940			Protein kinase protein with ad...		Potri.004G170943 [exp]	26.40	0.7600
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Potri.010G095700 [exp]	28.14	0.7972

Compare expression of checked genes

Potri.002G082900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.