Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	NPQ4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44575 288 / 4e-98 CP22, PSBS, NPQ4 PHOTOSYSTEM II SUBUNIT S, NONPHOTOCHEMICAL QUENCHING 4, Chlorophyll A-B binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018163 [exp] 312 / 3e-107 AT1G44575 328 / 7e-114 PHOTOSYSTEM II SUBUNIT S, NONPHOTOCHEMICAL QUENCHING 4, Chlorophyll A-B binding family protein (.1.2) Lus10025676 [exp] 309 / 4e-106 AT1G44575 323 / 4e-112 PHOTOSYSTEM II SUBUNIT S, NONPHOTOCHEMICAL QUENCHING 4, Chlorophyll A-B binding family protein (.1.2) Lus10029680 [exp] 308 / 1e-105 AT1G44575 315 / 6e-109 PHOTOSYSTEM II SUBUNIT S, NONPHOTOCHEMICAL QUENCHING 4, Chlorophyll A-B binding family protein (.1.2) Lus10042720 [exp] 305 / 2e-104 AT1G44575 318 / 1e-109 PHOTOSYSTEM II SUBUNIT S, NONPHOTOCHEMICAL QUENCHING 4, Chlorophyll A-B binding family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [poplar] [flax] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Potri.002G083500.6 pacid=42777997 polypeptide=Potri.002G083500.6.p locus=Potri.002G083500 ID=Potri.002G083500.6.v4.1 annot-version=v4.1 ATGGCTCAAACCATGGTGCTCATGTCTGGTGTCTCTACGAGGCAAGTGGTGGATTTGAAGAGAGACCCTTTACTTCAGTTTCAAGTTCAGAGACTAAGGC CTGCACCATTCTCTCGTCTTCTCTACAATCCTCTTCCTAGCAAAGCTTCTTCATCCAATGCTTTTACTACGCTTGCTCTCTTCAAACCCAGAACCAAGGC GGTTCCTAAGAAGGCTGCTCCACCACCGAAGCCAAAGGTTGAAGATGGCATTTTTGGTACCTCTGGTGGCATCGGTTTCACTAAGCAGAATGAGCTCTTC GTGGGACGTGTTGCCATGATTGGATTTGCTGCATCGTTGTTGGGAGAGGCAATAACAGGAAAAGGAATTCTATCTCAGTTGAACCTAGAGACTGGAATTC CCATTTACGAAGCAGAACCACTTCTTCTTTTCTTCATCCTTTTCACCTTGCTTGGAGCCATTGGAGCTTTGGGTGATCGTGGCCGCTTCGTTGATGACCC AACAACCGGCATTGAAGGAGCTGTGATCCCTCCAGGAAAAAGCTTCAGGGCAGCATTGGGTCTCAAGGAGGGAGGTAGTCCTCTATTTGGATTTACAAAA TCCAACGAGCTTTTCGTGGGGAGATTGGCTCAGCTGGGCATCGCTTTCTCTTTAATTGGAGAAATCATAACTGGAAAGGGAGCTCTAGCACAGCTCAACA TCGAGACAGGGATTCCAGTCAATGAAATTGAACCACTTGTGTTGTTCAACGTTCTCTTCTTCTTCATTGCCGCATTGAATCCTGGGACTGGGAAATTCGT GACCGATGAGGATGAAGAGTAG
AA sequence Show only first row Show all	>Potri.002G083500.6 pacid=42777997 polypeptide=Potri.002G083500.6.p locus=Potri.002G083500 ID=Potri.002G083500.6.v4.1 annot-version=v4.1 MAQTMVLMSGVSTRQVVDLKRDPLLQFQVQRLRPAPFSRLLYNPLPSKASSSNAFTTLALFKPRTKAVPKKAAPPPKPKVEDGIFGTSGGIGFTKQNELF VGRVAMIGFAASLLGEAITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDDPTTGIEGAVIPPGKSFRAALGLKEGGSPLFGFTK SNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPVNEIEPLVLFNVLFFFIAALNPGTGKFVTDEDEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Potri.002G083500 [exp]	0	1	NPQ4.1
AT4G10300			RmlC-like cupins superfamily p...		Potri.013G089600 [exp]	2.64	0.9873
AT5G55570			unknown protein		Potri.011G085700 [exp]	2.82	0.9863
AT3G21690			MATE efflux family protein (.1...		Potri.011G002600 [exp]	2.82	0.9814
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Potri.005G209500 [exp]	3.46	0.9851
AT4G03520		ATHM2	Thioredoxin superfamily protei...		Potri.002G073000 [exp]	4.58	0.9816
AT3G14420			Aldolase-type TIM barrel famil...		Potri.001G394400 [exp]	5.00	0.9835
AT5G57040			Lactoylglutathione lyase / gly...		Potri.018G056200 [exp]	5.19	0.9804
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Potri.019G118500 [exp]	5.29	0.9835	PETC.1
AT1G44920			unknown protein		Potri.002G114900 [exp]	6.63	0.9800
AT5G36120		atylmg3, CCB3	"cofactor assembly, complex C ...		Potri.002G062100 [exp]	6.92	0.9818

Compare expression of checked genes

Potri.002G083500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.